Detailed information NTG1128191

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: E5P3_RS25480
• Genome accession: NZ_LR594662
• Coordinates: 5350240..5351475 (+)
• Length: 411 a.a.
• NCBI ID: WP_162588506.1
• Uniprot ID: A0A6P2F8H8
• Organism: Variovorax sp. RA8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5345240..5356475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5P3_RS25455 (G3W91_RS25455)	pxpB	5345402..5346058 (-)	657	WP_162588501.1	5-oxoprolinase subunit PxpB	-
E5P3_RS25460 (G3W91_RS25460)	coaD	5346055..5346558 (-)	504	WP_162588502.1	pantetheine-phosphate adenylyltransferase	-
E5P3_RS25465 (G3W91_RS25465)	-	5346603..5347256 (-)	654	WP_162588503.1	RsmD family RNA methyltransferase	-
E5P3_RS25470 (G3W91_RS25470)	-	5347377..5348726 (-)	1350	WP_162588504.1	pitrilysin family protein	-
E5P3_RS25475 (G3W91_RS25475)	-	5348747..5350210 (-)	1464	WP_162588505.1	pitrilysin family protein	-
E5P3_RS25480 (G3W91_RS25480)	pilA	5350240..5351475 (+)	1236	WP_162588506.1	signal recognition particle-docking protein FtsY	Machinery gene
E5P3_RS25485 (G3W91_RS25485)	-	5351537..5351998 (+)	462	WP_162588507.1	Mpo1-like protein	-
E5P3_RS25490 (G3W91_RS25490)	rpoH	5352161..5353096 (+)	936	WP_162588508.1	RNA polymerase sigma factor RpoH	-
E5P3_RS25495 (G3W91_RS25495)	-	5353182..5353790 (-)	609	WP_174263099.1	SCO family protein	-
E5P3_RS25500 (G3W91_RS25500)	cyoE	5353799..5354704 (-)	906	WP_162588510.1	heme o synthase	-
E5P3_RS25505 (G3W91_RS25505)	-	5354701..5355897 (-)	1197	WP_162588511.1	COX15/CtaA family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 42857.47 Da
• Isoelectric Point: 5.3254

>NTDB_id=1128191 E5P3_RS25480 WP_162588506.1 5350240..5351475(+) (pilA) [Variovorax sp. RA8]
MFSFFKKKPAPDSSAPAPAPVETPAEPPAPARSVFSPSSWFGTKPVEPPPAVAPPPAAPAAPAAPAPSPSAEAPAPVPVP
VPVPVPVPVPVPVPVPVPVPVPAVVPAEAAPPERSGWLGKLRTGLRKTGNSITAAFVNAQIDDALYEELEEALLMADTGV
KATEYLLDDLRRRVRSNMATEASQVKLLLADAIADLLRPLEKELVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLSNEGA
SVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPAAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRV
VARADATAPHEVLLVIDGNTGQNALAQVRAFDEALGLTGLVITKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETF
KAREFAQALVG

Nucleotide

• Length: 1236 bp

>NTDB_id=1128191 E5P3_RS25480 WP_162588506.1 5350240..5351475(+) (pilA) [Variovorax sp. RA8]
ATGTTCAGTTTCTTCAAGAAAAAGCCGGCCCCCGACAGCTCTGCGCCGGCGCCTGCGCCTGTCGAGACGCCGGCCGAGCC
GCCGGCGCCCGCCAGGTCCGTGTTCTCGCCGTCCAGCTGGTTCGGCACCAAGCCCGTCGAGCCGCCACCCGCGGTGGCCC
CTCCCCCCGCTGCGCCTGCTGCCCCTGCAGCGCCCGCACCTTCGCCCAGTGCCGAGGCGCCCGCGCCGGTGCCGGTGCCG
GTGCCGGTGCCGGTGCCGGTGCCGGTGCCGGTGCCTGTGCCTGTGCCTGTGCCGGTGCCGGTGCCCGCGGTGGTGCCCGC
GGAAGCCGCGCCTCCGGAGCGCAGCGGCTGGCTCGGGAAGCTCAGGACGGGTTTGCGCAAGACCGGCAACAGCATCACCG
CCGCCTTCGTCAACGCCCAGATCGACGACGCCCTCTACGAGGAACTCGAAGAAGCCCTGCTGATGGCCGACACGGGCGTG
AAGGCCACGGAATACCTGCTGGACGACCTGCGCCGGCGCGTGCGCAGCAACATGGCGACCGAAGCCTCGCAGGTCAAGCT
CCTGCTGGCCGACGCCATTGCGGACCTGCTGCGCCCGCTCGAGAAGGAACTGGTGATCGGCGAGCACACGCCCACCGTGA
TCATGGTGGCGGGCGTCAACGGCGCGGGCAAGACCACCTCGATCGGCAAGCTCACGAAGCACCTTTCCAACGAGGGCGCT
TCGGTGCTACTGGCGGCGGCCGACACCTTCCGCGCTGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAACACGGT
CGAGATCGTGAGCCAGGAGGGCGGCGATCCGGCCGCCGTGAGCTTCGACGCGGTCAATGCCGGCAAGGCGCGCGGCAAGG
ACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACCCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTG
GTGGCCCGGGCCGACGCCACGGCGCCGCACGAGGTGCTGCTCGTGATCGACGGCAACACCGGGCAGAACGCCCTGGCCCA
GGTCCGGGCCTTCGACGAAGCGCTGGGCCTGACGGGCCTGGTCATCACCAAGCTGGACGGCACTGCCAAGGGCGGCGTGC
TGTGCGCGATCGCGCGCGAGCGGCCGATCCCGGTGTATTTCATCGGGGTGGGCGAGAAGCTGGAAGACCTGGAGACCTTC
AAGGCCCGGGAGTTCGCGCAGGCCCTGGTGGGATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (211-410)

• SRP54-type protein, helical bundle domain (SRP54_N) (129-192)

3D structure

• AlphaFold DB: A0A6P2F8H8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	46.809	100	0.482