Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGL20_RS02150 Genome accession   NZ_LR594050
Coordinates   408420..409919 (+) Length   499 a.a.
NCBI ID   WP_093959230.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10925     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 403420..414919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL20_RS02135 (NCTC10925_00431) pbp3 403543..404757 (-) 1215 WP_093959233.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL20_RS02140 (NCTC10925_00432) pbp3 404804..406042 (-) 1239 WP_093959228.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL20_RS02145 (NCTC10925_00433) amiA3 406368..408350 (+) 1983 WP_093959229.1 peptide ABC transporter substrate-binding protein Regulator
  FGL20_RS02150 (NCTC10925_00434) amiC 408420..409919 (+) 1500 WP_093959230.1 ABC transporter permease Regulator
  FGL20_RS02155 (NCTC10925_00435) amiD 409919..410845 (+) 927 WP_093959231.1 oligopeptide ABC transporter permease OppC Regulator
  FGL20_RS02160 (NCTC10925_00436) amiE 410854..411924 (+) 1071 WP_003085730.1 ABC transporter ATP-binding protein Regulator
  FGL20_RS02165 (NCTC10925_00437) amiF 411917..412840 (+) 924 WP_003084166.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55974.54 Da        Isoelectric Point: 10.1102

>NTDB_id=1128029 FGL20_RS02150 WP_093959230.1 408420..409919(+) (amiC) [Streptococcus porcinus strain NCTC10925]
MKKYIIERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKENYRNTIFERMGYISYYNSKELEANAE
KIDKSVSVEPSKANQKIYQKYIKSIGNGWKLKRFEESKKFYAVRNIPIYERVWNFFSQLIVIDHPWVIQDKKNPNLARYI
RPEIDPAVGPALVGSGTKHKYMLYFNGQFPFVHQNFIGFNLGTSYPTYANIPVIQVITQEQGRTLSKEVTFPNGTKKFSP
INIYSRTYKSPSKADARDRMNFGKDDPYTATENNHAEPSMIANSFIIGMIGVLLSYIFGLPIGMLMAYYKDGIFDRFSTG
ATTFMLALPSIALIYIVRFLGSIVGLPDTFPLLGASDPKSYVLPALILGILGTPGNVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAVVATIAGATLTETVFAFPGMGKMLIDAIKAANNTMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1128029 FGL20_RS02150 WP_093959230.1 408420..409919(+) (amiC) [Streptococcus porcinus strain NCTC10925]
ATGAAAAAGTATATTATTGAGCGCATCTTGAGGTCTTTAATATCAATCTTGTTGGTAACTACACTGACTTACGTTATTGT
TTTTACACTTGTTCCAACAAATTTGATTTTTAAACAAGATCCTAATTATAACAAGATGGTGACAACACCAGATAAAAAAG
AAAATTATCGAAATACGATTTTCGAGCGTATGGGCTATATTTCCTATTATAATAGTAAAGAATTAGAAGCTAACGCTGAG
AAAATAGATAAATCTGTTAGCGTCGAGCCATCAAAGGCTAATCAAAAAATATATCAAAAATATATCAAATCCATCGGAAA
TGGTTGGAAATTGAAACGATTTGAAGAAAGTAAAAAATTCTATGCAGTCCGTAACATACCAATTTATGAACGGGTTTGGA
ATTTTTTCAGCCAGTTAATAGTGATTGACCATCCATGGGTAATTCAAGACAAAAAGAATCCAAATTTAGCTCGTTATATT
CGTCCAGAAATAGATCCTGCAGTAGGTCCAGCTTTGGTTGGTTCAGGAACAAAACACAAGTACATGTTATACTTCAATGG
GCAGTTTCCTTTTGTTCACCAGAACTTTATTGGTTTTAATTTGGGGACTTCTTACCCGACTTATGCTAATATCCCTGTTA
TTCAAGTTATCACACAAGAACAAGGGCGTACACTATCTAAAGAAGTAACGTTCCCAAATGGGACTAAGAAGTTTTCACCG
ATAAATATTTATTCTCGTACCTATAAATCACCTAGTAAGGCAGATGCTAGAGATCGAATGAACTTTGGAAAAGATGACCC
ATACACTGCAACTGAGAACAATCATGCAGAGCCGTCAATGATAGCTAATTCTTTCATTATCGGAATGATTGGTGTTTTAC
TATCCTATATCTTTGGCCTTCCAATTGGGATGTTGATGGCTTATTATAAAGATGGGATATTTGATCGTTTCTCTACGGGG
GCTACAACTTTTATGTTGGCACTTCCGAGTATCGCATTGATTTACATTGTTCGTTTTTTGGGCTCAATAGTTGGCCTTCC
AGATACATTTCCATTGCTAGGGGCGAGTGATCCTAAGTCCTATGTCTTACCGGCTCTTATTTTGGGAATTCTTGGAACAC
CTGGAAATGTAGTCTGGTTCCGTCGATACTTAGTCGACTTGCAAGGTAGTGATTTTGTTCGCTTTGCTCGTGCTAAAGGA
CTGACTGAAGCTGAAATATCTAAAAATCACTTATTTAAACAAGCAATGGTTCCTATTGTTAATGGAATCCCACAAGCAGT
AGTAGCTACTATTGCGGGTGCCACTTTGACTGAGACTGTCTTTGCCTTTCCAGGAATGGGTAAGATGCTGATTGATGCTA
TTAAGGCAGCTAATAATACAATGGTTGTTGGACTTGTCTTTATATTCGCAGTTCTTTCTATTTTAGCCCTATTAGCTGGT
GACATCTTAATGACAATTCTTGACCCACGTATCAAATTATCTAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619

Multiple sequence alignment