Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FGL23_RS05550 Genome accession   NZ_LR594049
Coordinates   1165874..1167103 (-) Length   409 a.a.
NCBI ID   WP_008808666.1    Uniprot ID   A0AAP2K4Q6
Organism   Streptococcus gordonii strain NCTC10231     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160874..1172103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS05525 (NCTC10231_01103) - 1161815..1162555 (-) 741 WP_048779976.1 esterase family protein -
  FGL23_RS05530 (NCTC10231_01104) - 1162605..1163429 (-) 825 WP_048779978.1 alpha/beta hydrolase -
  FGL23_RS05535 (NCTC10231_01105) - 1163523..1164320 (-) 798 WP_061604050.1 formate/nitrite transporter family protein -
  FGL23_RS05540 (NCTC10231_01106) - 1164448..1165137 (-) 690 WP_012000547.1 glucosaminidase domain-containing protein -
  FGL23_RS05545 (NCTC10231_01107) yihA 1165271..1165864 (-) 594 WP_061604049.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FGL23_RS05550 (NCTC10231_01108) clpX 1165874..1167103 (-) 1230 WP_008808666.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FGL23_RS05560 (NCTC10231_01109) - 1167312..1167824 (-) 513 WP_048779984.1 dihydrofolate reductase -
  FGL23_RS05565 (NCTC10231_01110) - 1167970..1168470 (-) 501 WP_061604048.1 hypothetical protein -
  FGL23_RS05570 (NCTC10231_01111) - 1168601..1169440 (-) 840 WP_061604047.1 thymidylate synthase -
  FGL23_RS05575 (NCTC10231_01112) - 1169539..1170498 (-) 960 WP_060553599.1 ROK family glucokinase -
  FGL23_RS05580 (NCTC10231_01113) - 1170673..1171518 (-) 846 WP_060553598.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45650.21 Da        Isoelectric Point: 4.4870

>NTDB_id=1127968 FGL23_RS05550 WP_008808666.1 1165874..1167103(-) (clpX) [Streptococcus gordonii strain NCTC10231]
MPTNRNEEMMVYCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLHILNHYVIGQER
AKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENESYMQAIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LREPKNALVKQYQALLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSKENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1127968 FGL23_RS05550 WP_008808666.1 1165874..1167103(-) (clpX) [Streptococcus gordonii strain NCTC10231]
ATGCCTACCAATCGTAATGAAGAGATGATGGTATATTGTTCATTTTGTGGGAAGAACCAAGATGAAGTTCAAAAGATTAT
TGCAGGTAATAACGCTTTTATTTGTAATGAGTGTGTAGAATTAGCGCAAGAAATTATCCGTGAAGAATTGGCCGAAGAAG
TCTTAGCTGACTTGTCAGAGGTTCCAAAACCTCAAGAATTATTGCATATTCTAAACCATTATGTCATCGGCCAAGAGCGT
GCTAAAAGAGCGCTAGCTGTAGCGGTATATAATCACTACAAGCGTATTAATTTTCATGACAGTCGCGAAGAAGACGATGT
TGAATTACAAAAATCAAATATTTTAATGATCGGTCCAACGGGTTCTGGAAAAACTTTTCTTGCTCAAACCTTGGCTAGAA
GTTTAAATGTGCCATTTGCGATTGCTGATGCGACAGCATTAACAGAGGCTGGTTATGTCGGAGAAGATGTAGAAAATATT
CTTTTAAAACTTTTACAGGCGGCTGATTTCAATATTGAACGTGCAGAACGCGGAATTATCTACGTTGATGAGATTGATAA
GATCGCTAAAAAAAGTGAAAATGTTTCTATCACGCGCGATGTATCAGGTGAAGGAGTACAGCAAGCACTCTTAAAAATTA
TCGAGGGTACTGTAGCAAGTGTTCCGCCTCAAGGAGGTCGCAAGCATCCGCAGCAAGAAATGATTCAAGTTGATACCAAA
AATATTCTTTTCATCGTTGGTGGTGCCTTTGATGGAATTGAAGAAATTGTAAAACAACGTTTGGGCGAGAAAATTATTGG
TTTTGGTCAAAATAACAAAGCTATCGATGAAAACGAGTCCTACATGCAGGCTATTATTGCTGAAGATATTCAAAAATTTG
GAATTATCCCTGAATTAATTGGTCGTTTGCCTGTTTTTGCTGCTCTGGAACAACTGACTGTAGATGACTTGGTTCGTATT
CTTCGTGAGCCAAAGAATGCTTTGGTTAAACAATACCAGGCTCTCTTGTCTTACGATGATGTTAAACTAGAGTTTGATGA
TGATGCTTTACAGGAAATCGCGAACAAGGCCATTGAGCGCAAAACTGGTGCTCGCGGTCTACGTTCTATCATAGAAGAAA
CCATGATGGATGTGATGTTCGAAGTTCCAAGTAAAGAAAATGTGAAACTTGTCAGAATTACGAAGGAAGCCGTTGATGGT
ACGGATAAACCAATTTTAGAGACTGCTTGA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.575

100

0.856
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.105

98.044

0.57

Multiple sequence alignment