Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FGL21_RS04790 Genome accession   NZ_LR594047
Coordinates   926506..927735 (+) Length   409 a.a.
NCBI ID   WP_014612216.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 921506..932735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL21_RS04765 (NCTC11554_00976) - 922128..923405 (-) 1278 WP_012766848.1 hydroxymethylglutaryl-CoA reductase, degradative -
  FGL21_RS04770 (NCTC11554_00977) - 923386..924567 (-) 1182 WP_003062183.1 hydroxymethylglutaryl-CoA synthase -
  FGL21_RS04775 (NCTC11554_00978) - 924785..925624 (+) 840 WP_003054196.1 thymidylate synthase -
  FGL21_RS04780 (NCTC11554_00979) - 925705..926202 (+) 498 WP_003054187.1 dihydrofolate reductase -
  FGL21_RS04785 (NCTC11554_00980) - 926222..926392 (+) 171 WP_003054200.1 hypothetical protein -
  FGL21_RS04790 (NCTC11554_00981) clpX 926506..927735 (+) 1230 WP_014612216.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FGL21_RS04795 (NCTC11554_00982) yihA 927745..928344 (+) 600 WP_003061604.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FGL21_RS04800 (NCTC11554_00983) - 928488..929276 (+) 789 WP_138128043.1 hypothetical protein -
  FGL21_RS04805 (NCTC11554_00984) clpC 929287..931386 (-) 2100 WP_138128045.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FGL21_RS04810 - 931884..932291 (-) 408 Protein_879 IS30 family transposase -
  FGL21_RS04815 - 932285..932461 (+) 177 Protein_880 IS30 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45033.52 Da        Isoelectric Point: 4.5866

>NTDB_id=1127861 FGL21_RS04790 WP_014612216.1 926506..927735(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
MAGSRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1127861 FGL21_RS04790 WP_014612216.1 926506..927735(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
ATGGCAGGAAGTCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.242

100

0.892
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment