Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGL21_RS01950 Genome accession   NZ_LR594047
Coordinates   355516..357018 (+) Length   500 a.a.
NCBI ID   WP_014612022.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 350516..362018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL21_RS01935 (NCTC11554_00392) - 350774..351742 (+) 969 WP_014612020.1 IS30 family transposase -
  FGL21_RS01940 (NCTC11554_00393) pbp3 351911..353149 (-) 1239 WP_138127965.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL21_RS01945 (NCTC11554_00394) amiA 353480..355450 (+) 1971 WP_138127967.1 peptide ABC transporter substrate-binding protein Regulator
  FGL21_RS01950 (NCTC11554_00395) amiC 355516..357018 (+) 1503 WP_014612022.1 ABC transporter permease Regulator
  FGL21_RS01955 (NCTC11554_00396) amiD 357018..357944 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  FGL21_RS01960 (NCTC11554_00397) amiE 357953..359023 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  FGL21_RS01965 (NCTC11554_00398) amiF 359016..359939 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  FGL21_RS01970 (NCTC11554_00399) - 359967..360953 (-) 987 WP_138127969.1 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55956.34 Da        Isoelectric Point: 10.2619

>NTDB_id=1127842 FGL21_RS01950 WP_014612022.1 355516..357018(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDITFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1127842 FGL21_RS01950 WP_014612022.1 355516..357018(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACTATCGT
ATATACCCTCGTCCCTGTCGGTCTTATTTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGGCGAACAGCTCTTCAAGATATTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.6

100

0.596
  amiC Streptococcus thermophilus LMG 18311

59.6

100

0.596

Multiple sequence alignment