Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LG36_RS12350 Genome accession   NZ_CP009472
Coordinates   891662..892657 (+) Length   331 a.a.
NCBI ID   WP_371744290.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 886662..897657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS04350 (LG36_0816) rpsA 887621..888847 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  LG36_RS04355 (LG36_0817) - 888998..889714 (+) 717 WP_038600055.1 nucleoside phosphorylase -
  LG36_RS04360 (LG36_0818) pnuC 889843..890556 (+) 714 WP_012897492.1 nicotinamide riboside transporter PnuC -
  LG36_RS12345 uvrC 890651..891613 (+) 963 Protein_840 excinuclease ABC subunit UvrC -
  LG36_RS12350 uvrC 891662..892657 (+) 996 WP_371744290.1 hypothetical protein Machinery gene
  LG36_RS04370 (LG36_0820) mutY 892822..893985 (+) 1164 WP_038600058.1 A/G-specific adenine glycosylase -
  LG36_RS04375 (LG36_0821) pepV 894051..895469 (+) 1419 WP_038600061.1 dipeptidase PepV -
  LG36_RS04380 (LG36_0822) acpS 895572..895931 (+) 360 WP_021468491.1 holo-ACP synthase -
  LG36_RS04385 (LG36_0823) alr 895976..897079 (+) 1104 WP_038600067.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36953.76 Da        Isoelectric Point: 10.2292

>NTDB_id=112783 LG36_RS12350 WP_371744290.1 891662..892657(+) (uvrC) [Lactococcus lactis strain AI06]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETPLPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLAVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=112783 LG36_RS12350 WP_371744290.1 891662..892657(+) (uvrC) [Lactococcus lactis strain AI06]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACAACTAAAGCAGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAGTCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCACGAGCTTTA
AAAGAAGAAACGCCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACC
CTTTAGCCGTGGTTCCCTTGTCAAGGCAATCTCAAGAATTCTTTTTGCTGACAAGAATTCAAGATGAGGTCCACCGCTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GCATTCCTTATGAAGTAGCAGAGCGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577

Multiple sequence alignment