Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL05_RS05985 Genome accession   NZ_LR594044
Coordinates   1231366..1233168 (-) Length   600 a.a.
NCBI ID   WP_020916433.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226366..1238168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS05965 (NCTC8796_01268) - 1228289..1229350 (-) 1062 WP_111712682.1 peptidyl-prolyl cis-trans isomerase -
  FGL05_RS05970 (NCTC8796_01269) - 1229420..1230121 (-) 702 WP_111712681.1 O-methyltransferase -
  FGL05_RS05975 (NCTC8796_01270) - 1230169..1230780 (-) 612 WP_020916435.1 HAD-IA family hydrolase -
  FGL05_RS05980 (NCTC8796_01271) - 1230800..1231297 (-) 498 WP_111713073.1 GNAT family N-acetyltransferase -
  FGL05_RS05985 (NCTC8796_01272) pepF 1231366..1233168 (-) 1803 WP_020916433.1 oligoendopeptidase F Regulator
  FGL05_RS05990 (NCTC8796_01273) coiA 1233168..1234130 (-) 963 WP_111712680.1 competence protein CoiA family protein Machinery gene
  FGL05_RS05995 (NCTC8796_01274) - 1234180..1234896 (-) 717 WP_111712679.1 pseudouridine synthase -
  FGL05_RS06000 (NCTC8796_01275) nagB 1234970..1235677 (-) 708 WP_111712678.1 glucosamine-6-phosphate deaminase -
  FGL05_RS06005 (NCTC8796_01276) - 1235810..1236316 (-) 507 WP_058833169.1 VIT1/CCC1 transporter family protein -
  FGL05_RS06010 (NCTC8796_01277) queA 1236480..1237508 (+) 1029 WP_020916428.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69085.17 Da        Isoelectric Point: 4.7843

>NTDB_id=1127679 FGL05_RS05985 WP_020916433.1 1231366..1233168(-) (pepF) [Streptococcus lutetiensis strain NCTC8796]
MSDNRSHIDEKYKWDLSTVFATDDAWEAELAKLDAGLEDAKKYKGHLTQSSKNLLTMTEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMKLSAEDFAAFVAETPALSAYTHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPEVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLSLLHRYVALRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAIFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127679 FGL05_RS05985 WP_020916433.1 1231366..1233168(-) (pepF) [Streptococcus lutetiensis strain NCTC8796]
ATGTCAGATAATCGTAGTCATATCGATGAAAAATATAAATGGGATCTAAGCACTGTTTTTGCGACTGATGACGCTTGGGA
GGCTGAATTAGCTAAGTTAGATGCTGGTTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACGCAATCAAGTAAGAATT
TGCTAACTATGACGGAGCATTATCTTGATTTGTCACGCAGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAATGAC
CAAGATACAACAGTGGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGAAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAGACGCCAGCACTATCAGCTT
ATACGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACATGTCTTGTCACAAAAAGAAGAAGAACTCTTAGCTGGTGCA
CACGAAATTTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTGGATAATGCTGATATTGTTTTCCCAGAGGTTTTAGATGA
TGAAGGCAATGAGGTACAATTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTATGAACAATTCCAACACACTTACGCTAAGACATTACAGACAAATGTTAAGGTTCAT
AACTATGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGTGTGAATGCACACTTGTCACTGCTTCATCGTTATGTGGCACTTCGTAAGAAAGTTCTTAAAT
TGGACGATTTGAAAATGTATGATATTCATACACCATTGTCTGAAATGGATATGAGTTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTATCTTCGGTAAAGATTATTCTGAACGTGTTCACCGTGCTTTCACAGAACGTTGGATTGA
CGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACATGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACAATCT
TCCGTCAAGCACAATTTGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCGGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAACTATTATGTTTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGTAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGCCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72

100

0.72

Multiple sequence alignment