Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FGL16_RS07165 | Genome accession | NZ_LR594043 |
| Coordinates | 1363924..1364457 (-) | Length | 177 a.a. |
| NCBI ID | WP_014736108.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain NCTC10237 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1334141..1372025 | 1363924..1364457 | within | 0 |
Gene organization within MGE regions
Location: 1334141..1372025
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL16_RS06965 (NCTC10237_01375) | - | 1334141..1334851 (-) | 711 | WP_014736072.1 | CHAP domain-containing protein | - |
| FGL16_RS06970 (NCTC10237_01377) | - | 1334981..1335184 (-) | 204 | WP_014736074.1 | phage holin | - |
| FGL16_RS06975 (NCTC10237_01378) | - | 1335159..1335614 (-) | 456 | WP_014736075.1 | hypothetical protein | - |
| FGL16_RS06980 (NCTC10237_01379) | - | 1335627..1335893 (-) | 267 | WP_014736076.1 | hypothetical protein | - |
| FGL16_RS06985 (NCTC10237_01380) | - | 1335955..1338009 (-) | 2055 | WP_014736077.1 | DUF859 family phage minor structural protein | - |
| FGL16_RS06990 (NCTC10237_01381) | - | 1338022..1342464 (-) | 4443 | WP_014736078.1 | phage tail spike protein | - |
| FGL16_RS06995 (NCTC10237_01382) | - | 1342464..1343966 (-) | 1503 | WP_014736079.1 | distal tail protein Dit | - |
| FGL16_RS07000 (NCTC10237_01383) | - | 1343963..1347325 (-) | 3363 | WP_014736080.1 | hypothetical protein | - |
| FGL16_RS07005 (NCTC10237_01384) | - | 1347345..1347932 (-) | 588 | WP_014736081.1 | Gp15 family bacteriophage protein | - |
| FGL16_RS07010 (NCTC10237_01385) | - | 1347932..1348300 (-) | 369 | WP_024405242.1 | hypothetical protein | - |
| FGL16_RS07015 (NCTC10237_01386) | - | 1348323..1348781 (-) | 459 | WP_014736082.1 | hypothetical protein | - |
| FGL16_RS07020 (NCTC10237_01387) | - | 1348785..1349192 (-) | 408 | WP_014736083.1 | minor capsid protein | - |
| FGL16_RS07025 (NCTC10237_01388) | - | 1349192..1349542 (-) | 351 | WP_014736084.1 | minor capsid protein | - |
| FGL16_RS07030 (NCTC10237_01389) | - | 1349542..1349868 (-) | 327 | WP_014736085.1 | putative minor capsid protein | - |
| FGL16_RS07035 (NCTC10237_01390) | - | 1349858..1350253 (-) | 396 | WP_014736086.1 | hypothetical protein | - |
| FGL16_RS07040 (NCTC10237_01391) | - | 1350297..1350551 (-) | 255 | WP_014736087.1 | hypothetical protein | - |
| FGL16_RS07045 (NCTC10237_01392) | - | 1350562..1351440 (-) | 879 | WP_014736088.1 | hypothetical protein | - |
| FGL16_RS07050 (NCTC10237_01393) | - | 1351459..1352025 (-) | 567 | WP_014736089.1 | phage scaffolding protein | - |
| FGL16_RS07055 (NCTC10237_01394) | - | 1352172..1353323 (-) | 1152 | WP_014736090.1 | phage minor capsid protein | - |
| FGL16_RS07060 (NCTC10237_01395) | - | 1353326..1353574 (-) | 249 | WP_024405241.1 | hypothetical protein | - |
| FGL16_RS07065 (NCTC10237_01396) | - | 1353561..1355150 (-) | 1590 | WP_014736092.1 | phage portal protein | - |
| FGL16_RS07070 (NCTC10237_01397) | - | 1355162..1356487 (-) | 1326 | WP_014736093.1 | PBSX family phage terminase large subunit | - |
| FGL16_RS07075 (NCTC10237_01398) | - | 1356477..1356968 (-) | 492 | WP_014736094.1 | terminase small subunit | - |
| FGL16_RS07080 (NCTC10237_01399) | - | 1357160..1357543 (-) | 384 | WP_014736095.1 | hypothetical protein | - |
| FGL16_RS07085 (NCTC10237_01400) | - | 1357540..1358211 (-) | 672 | WP_014736096.1 | DUF4417 domain-containing protein | - |
| FGL16_RS07090 (NCTC10237_01401) | - | 1358280..1358660 (-) | 381 | WP_014736097.1 | hypothetical protein | - |
| FGL16_RS07095 (NCTC10237_01402) | - | 1358661..1358897 (-) | 237 | WP_014736098.1 | hypothetical protein | - |
| FGL16_RS07100 (NCTC10237_01403) | - | 1358890..1359075 (-) | 186 | WP_024405239.1 | hypothetical protein | - |
| FGL16_RS07105 (NCTC10237_01404) | - | 1359062..1359478 (-) | 417 | WP_014736099.1 | hypothetical protein | - |
| FGL16_RS07110 (NCTC10237_01405) | - | 1359475..1359705 (-) | 231 | WP_024405238.1 | hypothetical protein | - |
| FGL16_RS07115 (NCTC10237_01406) | - | 1359698..1359928 (-) | 231 | WP_014736100.1 | hypothetical protein | - |
| FGL16_RS07120 (NCTC10237_01407) | - | 1359929..1360231 (-) | 303 | WP_014736101.1 | DUF1372 family protein | - |
| FGL16_RS07125 (NCTC10237_01408) | - | 1360232..1361083 (-) | 852 | WP_014736102.1 | prohibitin family protein | - |
| FGL16_RS11245 (NCTC10237_01409) | - | 1361096..1361221 (-) | 126 | WP_268739896.1 | hypothetical protein | - |
| FGL16_RS07130 (NCTC10237_01410) | - | 1361278..1361682 (-) | 405 | WP_014736104.1 | hypothetical protein | - |
| FGL16_RS07135 (NCTC10237_01411) | - | 1361703..1362440 (-) | 738 | WP_014736105.1 | hypothetical protein | - |
| FGL16_RS07140 (NCTC10237_01412) | - | 1362442..1362876 (-) | 435 | WP_014736106.1 | hypothetical protein | - |
| FGL16_RS07145 (NCTC10237_01413) | - | 1362887..1363321 (-) | 435 | WP_014736107.1 | helix-turn-helix domain-containing protein | - |
| FGL16_RS11300 | - | 1363630..1363908 (-) | 279 | Protein_1310 | hypothetical protein | - |
| FGL16_RS07165 (NCTC10237_01415) | ssbA | 1363924..1364457 (-) | 534 | WP_014736108.1 | single-stranded DNA-binding protein | Machinery gene |
| FGL16_RS10960 (NCTC10237_01416) | - | 1364447..1364623 (-) | 177 | WP_153308538.1 | hypothetical protein | - |
| FGL16_RS07170 (NCTC10237_01417) | - | 1364623..1365156 (-) | 534 | WP_014736109.1 | MazG-like family protein | - |
| FGL16_RS07175 (NCTC10237_01418) | - | 1365156..1366178 (-) | 1023 | WP_014736110.1 | DUF1351 domain-containing protein | - |
| FGL16_RS07180 (NCTC10237_01419) | - | 1366182..1366874 (-) | 693 | WP_014736111.1 | ERF family protein | - |
| FGL16_RS07185 (NCTC10237_01420) | - | 1366878..1367456 (-) | 579 | WP_024405236.1 | hypothetical protein | - |
| FGL16_RS07190 (NCTC10237_01421) | - | 1367690..1368007 (-) | 318 | WP_014736114.1 | DNA-binding protein | - |
| FGL16_RS07195 (NCTC10237_01422) | - | 1368050..1368328 (-) | 279 | WP_014736115.1 | hypothetical protein | - |
| FGL16_RS10965 | - | 1368321..1368476 (-) | 156 | WP_153308537.1 | hypothetical protein | - |
| FGL16_RS07200 (NCTC10237_01423) | - | 1368571..1369071 (-) | 501 | WP_014736116.1 | hypothetical protein | - |
| FGL16_RS07205 (NCTC10237_01424) | - | 1369082..1369273 (-) | 192 | WP_014736117.1 | hypothetical protein | - |
| FGL16_RS07210 (NCTC10237_01425) | - | 1369582..1369929 (+) | 348 | WP_014736118.1 | helix-turn-helix transcriptional regulator | - |
| FGL16_RS07215 (NCTC10237_01426) | - | 1369942..1370325 (+) | 384 | WP_014736119.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FGL16_RS07220 (NCTC10237_01427) | - | 1370335..1371132 (+) | 798 | WP_014736120.1 | hypothetical protein | - |
| FGL16_RS07225 (NCTC10237_01428) | - | 1371255..1372025 (+) | 771 | WP_050572622.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19704.35 Da Isoelectric Point: 5.7104
>NTDB_id=1127640 FGL16_RS07165 WP_014736108.1 1363924..1364457(-) (ssbA) [Streptococcus suis strain NCTC10237]
MINNVVLVGRLTRDAELRYTPSNVAVATFTLAVNRSFKNEAGEREADFINCVIWRQAAENLANWAKKGSLIGITGNIQTR
HYDNQQGQRVYVTEVIASNFQLLESRNNQSGQQNQSNSFHNGNNSNSGNFQSGNNQGGYQSPFGNQSTPDFSRSNQQSFF
QGQTTNPMDISDDDLPF
MINNVVLVGRLTRDAELRYTPSNVAVATFTLAVNRSFKNEAGEREADFINCVIWRQAAENLANWAKKGSLIGITGNIQTR
HYDNQQGQRVYVTEVIASNFQLLESRNNQSGQQNQSNSFHNGNNSNSGNFQSGNNQGGYQSPFGNQSTPDFSRSNQQSFF
QGQTTNPMDISDDDLPF
Nucleotide
Download Length: 534 bp
>NTDB_id=1127640 FGL16_RS07165 WP_014736108.1 1363924..1364457(-) (ssbA) [Streptococcus suis strain NCTC10237]
ATGATAAATAACGTTGTTTTAGTAGGGCGACTGACTAGAGATGCTGAATTAAGATATACACCATCAAATGTTGCAGTTGC
CACTTTTACCCTTGCAGTAAATCGCTCTTTCAAAAATGAGGCTGGTGAACGTGAGGCAGATTTTATCAATTGTGTAATTT
GGCGACAAGCAGCAGAAAACCTTGCTAATTGGGCTAAGAAAGGCTCATTGATTGGTATTACAGGAAATATCCAAACACGC
CACTATGACAATCAACAAGGGCAGCGCGTGTATGTGACAGAAGTTATTGCAAGTAATTTTCAATTGTTGGAAAGTCGGAA
CAATCAAAGCGGACAGCAGAACCAGAGCAACTCTTTCCATAATGGAAATAACTCAAATAGTGGTAATTTCCAAAGTGGAA
ACAACCAAGGAGGCTATCAGTCTCCATTTGGAAATCAATCCACACCAGATTTTAGCCGTAGCAACCAACAATCATTTTTC
CAAGGACAAACCACAAATCCTATGGATATTTCCGATGATGATTTACCTTTCTAG
ATGATAAATAACGTTGTTTTAGTAGGGCGACTGACTAGAGATGCTGAATTAAGATATACACCATCAAATGTTGCAGTTGC
CACTTTTACCCTTGCAGTAAATCGCTCTTTCAAAAATGAGGCTGGTGAACGTGAGGCAGATTTTATCAATTGTGTAATTT
GGCGACAAGCAGCAGAAAACCTTGCTAATTGGGCTAAGAAAGGCTCATTGATTGGTATTACAGGAAATATCCAAACACGC
CACTATGACAATCAACAAGGGCAGCGCGTGTATGTGACAGAAGTTATTGCAAGTAATTTTCAATTGTTGGAAAGTCGGAA
CAATCAAAGCGGACAGCAGAACCAGAGCAACTCTTTCCATAATGGAAATAACTCAAATAGTGGTAATTTCCAAAGTGGAA
ACAACCAAGGAGGCTATCAGTCTCCATTTGGAAATCAATCCACACCAGATTTTAGCCGTAGCAACCAACAATCATTTTTC
CAAGGACAAACCACAAATCCTATGGATATTTCCGATGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.945 |
100 |
0.565 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.367 |
100 |
0.554 |