Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LG36_RS10370 Genome accession   NZ_CP009472
Coordinates   2155363..2156028 (+) Length   221 a.a.
NCBI ID   WP_038602262.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150363..2161028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS10340 (LG36_1974) - 2151492..2151830 (-) 339 WP_021723108.1 lactococcin 972 family bacteriocin -
  LG36_RS10345 (LG36_1975) - 2152130..2152858 (-) 729 WP_038602259.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  LG36_RS10350 (LG36_1976) - 2153051..2153272 (+) 222 WP_021723106.1 YqgQ family protein -
  LG36_RS10355 (LG36_1977) - 2153307..2154278 (+) 972 WP_021723105.1 ROK family glucokinase -
  LG36_RS10360 (LG36_1978) - 2154281..2154667 (+) 387 WP_021723104.1 rhodanese-like domain-containing protein -
  LG36_RS10365 (LG36_1979) - 2154750..2155196 (-) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  LG36_RS10370 (LG36_1980) cclA/cilC 2155363..2156028 (+) 666 WP_038602262.1 A24 family peptidase Machinery gene
  LG36_RS10375 (LG36_1981) dinB 2155979..2157073 (-) 1095 WP_038602265.1 DNA polymerase IV -
  LG36_RS10380 (LG36_1982) - 2157152..2157643 (-) 492 WP_038602268.1 prolyl-tRNA synthetase associated domain-containing protein -
  LG36_RS10385 (LG36_1983) - 2157722..2159215 (-) 1494 WP_021723101.1 basic amino acid/polyamine antiporter -
  LG36_RS10390 (LG36_1984) - 2159407..2160537 (-) 1131 WP_038602271.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25675.82 Da        Isoelectric Point: 8.8497

>NTDB_id=112761 LG36_RS10370 WP_038602262.1 2155363..2156028(+) (cclA/cilC) [Lactococcus lactis strain AI06]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQRLLAYRDLIPIFSQLSSGSQCRYCKSKIPYLYIFLEFST
ALIFVLAWVNYLNPSQFLMIILSLILSAFDYRQHSFPFVTWFIFALSFILIFPLSPLFYFWLILALLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=112761 LG36_RS10370 WP_038602262.1 2155363..2156028(+) (cclA/cilC) [Lactococcus lactis strain AI06]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCATTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCGATTATTTTTGGACGTTCACATTGTGATTCTTGTCAGCGACTTTTAGCCTATCGTGATTTAATTCCTATTTTTT
CTCAATTAAGCTCGGGCTCACAATGCCGTTATTGTAAAAGTAAAATTCCATATCTATATATTTTTTTGGAGTTCTCAACA
GCTTTAATTTTTGTTTTGGCTTGGGTAAATTATCTTAACCCTAGTCAATTTTTAATGATTATTCTTTCGCTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTACCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCCTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

36.986

99.095

0.367
  cclA/cilC Streptococcus pneumoniae Rx1

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae D39

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae R6

37.209

97.285

0.362

Multiple sequence alignment