Detailed information NTG0112756

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LG36_RS10010
• Genome accession: NZ_CP009472
• Coordinates: 2094682..2095758 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis strain AI06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2089682..2100758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG36_RS09985 (LG36_1908)	pgsA	2089789..2090361 (-)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LG36_RS09990 (LG36_1909)	-	2090402..2091298 (-)	897	WP_038602123.1	RodZ family helix-turn-helix domain-containing protein	-
LG36_RS09995 (LG36_1910)	yfmH	2091563..2092846 (-)	1284	WP_029344435.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LG36_RS10000 (LG36_1911)	yfmF	2092836..2094122 (-)	1287	WP_173402266.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LG36_RS10005 (LG36_1912)	yaaA	2094320..2094682 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
LG36_RS10010 (LG36_1913)	recF	2094682..2095758 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LG36_RS10015 (LG36_1914)	-	2095802..2096170 (-)	369	WP_038602126.1	carboxymuconolactone decarboxylase family protein	-
LG36_RS10020 (LG36_1915)	-	2096247..2096624 (+)	378	WP_038602130.1	MerR family transcriptional regulator	-
LG36_RS10025 (LG36_1916)	-	2096637..2097572 (-)	936	WP_038602135.1	alpha/beta hydrolase	-
LG36_RS10030 (LG36_1917)	galE	2097681..2098661 (-)	981	WP_038602138.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=112756 LG36_RS10010 WP_010906242.1 2094682..2095758(+) (recF) [Lactococcus lactis strain AI06]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=112756 LG36_RS10010 WP_010906242.1 2094682..2095758(+) (recF) [Lactococcus lactis strain AI06]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAACGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCATGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAAGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGACAAACTTGAAGTTCATGCAAAAAAGATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCCGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACGTTTATAACTACAACTACTCTTGATCATCTCAAAAATTTGCCTGAGAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAGGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447