Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL12_RS08025 Genome accession   NZ_LR594041
Coordinates   1659218..1661020 (-) Length   600 a.a.
NCBI ID   WP_012130639.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654218..1666020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08010 (NCTC9124_01612) - 1656684..1657169 (-) 486 WP_012130636.1 LURP-one-related family protein -
  FGL12_RS08015 (NCTC9124_01614) prsA 1657398..1658327 (-) 930 WP_012130637.1 peptidylprolyl isomerase PrsA -
  FGL12_RS08020 (NCTC9124_01615) - 1658530..1659216 (-) 687 WP_012130638.1 O-methyltransferase -
  FGL12_RS08025 (NCTC9124_01616) pepF 1659218..1661020 (-) 1803 WP_012130639.1 oligoendopeptidase F Regulator
  FGL12_RS08030 (NCTC9124_01617) coiA 1661180..1662133 (-) 954 WP_012130640.1 competence protein CoiA family protein Machinery gene
  FGL12_RS08035 (NCTC9124_01618) celB 1662226..1663581 (-) 1356 WP_012130641.1 PTS cellobiose transporter subunit IIC -
  FGL12_RS08040 (NCTC9124_01619) - 1663602..1664087 (-) 486 WP_012130642.1 hypothetical protein -
  FGL12_RS08045 (NCTC9124_01620) - 1664115..1664432 (-) 318 WP_012130643.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69466.51 Da        Isoelectric Point: 4.5191

>NTDB_id=1127498 FGL12_RS08025 WP_012130639.1 1659218..1661020(-) (pepF) [Streptococcus gordonii strain NCTC9124]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVFEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPMVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127498 FGL12_RS08025 WP_012130639.1 1659218..1661020(-) (pepF) [Streptococcus gordonii strain NCTC9124]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTTTGAAGAATTAAAAAATGCAAGTAATCTAGCAGGACATCTGCTGGATTCGGCAGAAAGCC
TTTTGACAACAACGGAAATTCAATTAGATTTGATGCGCCGTATTGAGAAACTTTATTCCTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTGGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTTGGCCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGATCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCGATGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTAACACATGGGAACTATATTTCTTTAGTAGAGTCTAAAAATCGGGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTATATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCTAAAGTCCGAAAGTTTTCATCTGCCCGCGAGGCGGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACGCCTTTGTCAGAAACAGATTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTCATGAAAATCAAGGTAAGCGCTCAGGGGCATACTCAGGAGGATCTTATGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGATACACTAGATAACCTCTTTACTTTGGTGCACGAGACAGGTCACAGTATGCACTCCAGCTATACTCGCGAAACC
CAGCCTTATGTCTATGGAGACTACTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTGGAAGACGATGCAACCCGATTTGCTATCCTCAATCACTTCTTGGACGGCTTTAGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCGGAGTTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGATAATCCGCAGATTCAGTACGAATG
GGCACGCATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCTACAGGATTTGCAGCTGCTTCGGCCTTGGCCG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTACCTCAAAGCTGGGAACTCTGACTATCCGCTC
AACGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATTTAAATGCTGCCTTTGCAGTCTTTGAGCGTCGTCT
GGACGAATTTGAAGCCTTGGTAGAAAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682

Multiple sequence alignment