Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   FGK97_RS02160 Genome accession   NZ_LR594037
Coordinates   422256..422966 (-) Length   236 a.a.
NCBI ID   WP_138099358.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC11064     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 417256..427966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK97_RS02145 (NCTC11064_00434) - 417649..418773 (+) 1125 WP_003028351.1 AI-2E family transporter -
  FGK97_RS02150 (NCTC11064_00435) - 418997..420646 (+) 1650 WP_021001387.1 phosphoenolpyruvate carboxykinase (ATP) -
  FGK97_RS02155 (NCTC11064_00436) - 420763..422103 (+) 1341 WP_021001388.1 hemolysin family protein -
  FGK97_RS02160 (NCTC11064_00437) treR 422256..422966 (-) 711 WP_138099358.1 trehalose operon repressor Regulator
  FGK97_RS10030 (NCTC11064_00438) - 423145..423585 (+) 441 WP_405196365.1 glucose PTS transporter subunit EIIB -
  FGK97_RS02165 (NCTC11064_00439) - 423551..425158 (+) 1608 WP_415239192.1 glucose PTS transporter subunit IIA -
  FGK97_RS02170 (NCTC11064_00440) - 425365..426996 (+) 1632 WP_232043628.1 alpha,alpha-phosphotrehalase -

Sequence


Protein


Download         Length: 236 a.a.        Molecular weight: 27644.70 Da        Isoelectric Point: 9.7182

>NTDB_id=1127408 FGK97_RS02160 WP_138099358.1 422256..422966(-) (treR) [Streptococcus anginosus strain NCTC11064]
MKKYKQIFKLLEQDILNEKYQINDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKRRGQGSKVIQPEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSINREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1127408 FGK97_RS02160 WP_138099358.1 422256..422966(-) (treR) [Streptococcus anginosus strain NCTC11064]
ATGAAAAAATATAAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATAAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAAGGAGAGGTCAAGGCTCTAAAGTCATCCAACCAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAACCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACTAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCAAAAGTCTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTCTCCAAACGGCAAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.983

100

0.64


Multiple sequence alignment