Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FGK96_RS08745 Genome accession   NZ_LR594036
Coordinates   1810897..1811622 (-) Length   241 a.a.
NCBI ID   WP_138083141.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805897..1816622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS08710 (NCTC10710_01803) rnpM 1806080..1806376 (-) 297 WP_138083129.1 RNase P modulator RnpM -
  FGK96_RS08715 (NCTC10710_01804) nusA 1806392..1807546 (-) 1155 WP_138083131.1 transcription termination factor NusA -
  FGK96_RS08720 (NCTC10710_01805) rimP 1807608..1808105 (-) 498 WP_172601642.1 ribosome maturation factor RimP -
  FGK96_RS08730 (NCTC10710_01807) trmB 1808373..1809008 (-) 636 WP_138083135.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGK96_RS08735 (NCTC10710_01808) ccrZ 1809008..1809799 (-) 792 WP_138083137.1 cell cycle regulator CcrZ -
  FGK96_RS08740 (NCTC10710_01809) - 1809860..1810894 (-) 1035 WP_138083139.1 ABC transporter permease -
  FGK96_RS08745 (NCTC10710_01810) pptA 1810897..1811622 (-) 726 WP_138083141.1 ABC transporter ATP-binding protein Regulator
  FGK96_RS08750 (NCTC10710_01811) - 1812056..1812475 (+) 420 WP_138083143.1 HIT family protein -
  FGK96_RS08755 (NCTC10710_01812) - 1812472..1812756 (+) 285 WP_138083145.1 chemotaxis protein -
  FGK96_RS08760 (NCTC10710_01813) - 1813374..1814231 (+) 858 WP_138083147.1 helix-turn-helix domain-containing protein -
  FGK96_RS08765 (NCTC10710_01814) - 1814600..1814785 (+) 186 WP_138083149.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26716.98 Da        Isoelectric Point: 4.5232

>NTDB_id=1127369 FGK96_RS08745 WP_138083141.1 1810897..1811622(-) (pptA) [Streptococcus porcinus strain NCTC10710]
MLKIENLTGGYINIPVLKDITFSVDDGQLVGLIGLNGAGKSTTINEIIGLLRPYKGTIKIDGLSLEEDPAAYRKKIGFIP
ETPSLYEELTLAEHIETIAMAYDIEVSDAFERAQPLLKTYRLLDRLDWYPSQFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLINYLEVEKGKGKSILMSTHVLDSAEKMCDSFVILHQGEIRAQGTLSDLRATFGNPKASLNDIYLALTTE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1127369 FGK96_RS08745 WP_138083141.1 1810897..1811622(-) (pptA) [Streptococcus porcinus strain NCTC10710]
ATGCTGAAAATCGAAAATTTAACGGGGGGATATATTAATATTCCTGTTCTGAAAGATATTACTTTCTCAGTTGATGACGG
CCAGTTAGTAGGTTTAATCGGCTTAAATGGCGCTGGGAAATCAACTACTATTAATGAAATTATCGGACTTTTAAGACCTT
ATAAGGGCACAATAAAAATTGATGGGCTAAGCTTGGAAGAAGACCCAGCAGCTTATCGTAAAAAAATTGGATTTATTCCA
GAAACACCAAGTTTATATGAAGAATTGACTTTGGCAGAACATATTGAAACGATAGCTATGGCTTATGATATAGAGGTTTC
AGACGCTTTTGAACGTGCACAGCCTCTACTCAAAACTTATCGTTTGTTAGACCGATTAGATTGGTATCCAAGCCAGTTTT
CAAAAGGAATGAAACAAAAGGTGATGATTATTTGTGCTTTTATTATTGATCCTAGTCTCTTCATTTTAGATGAACCTTTC
TTGGGACTTGATCCTTTAGCTATCTCGGATTTAATTAATTATTTAGAAGTTGAAAAAGGAAAAGGGAAGTCTATTTTAAT
GAGCACTCATGTCCTTGATTCAGCAGAAAAAATGTGTGATTCTTTTGTAATTCTACACCAGGGAGAGATAAGAGCTCAAG
GAACTCTATCTGATTTACGAGCAACTTTTGGAAATCCAAAAGCCAGTTTGAATGATATCTATTTAGCGTTAACAACTGAG
GTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.529

98.755

0.726
  pptA Streptococcus thermophilus LMD-9

73.529

98.755

0.726

Multiple sequence alignment