Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FGK96_RS08325 Genome accession   NZ_LR594036
Coordinates   1724178..1725479 (-) Length   433 a.a.
NCBI ID   WP_138083003.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719178..1730479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS08310 - 1722469..1722732 (-) 264 Protein_1597 peptide ABC transporter ATP-binding protein -
  FGK96_RS08315 (NCTC10710_01724) hpf 1722885..1723433 (-) 549 WP_138082999.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FGK96_RS08320 (NCTC10710_01725) - 1723508..1724188 (-) 681 WP_138083001.1 ComF family protein -
  FGK96_RS08325 (NCTC10710_01726) comFA/cflA 1724178..1725479 (-) 1302 WP_138083003.1 DEAD/DEAH box helicase Machinery gene
  FGK96_RS08330 (NCTC10710_01727) - 1725535..1726164 (+) 630 WP_138083005.1 YigZ family protein -
  FGK96_RS08335 (NCTC10710_01728) cysK 1726277..1727203 (+) 927 WP_138083007.1 cysteine synthase A -
  FGK96_RS08340 (NCTC10710_01729) - 1727237..1727590 (-) 354 WP_138083009.1 S1 RNA-binding domain-containing protein -
  FGK96_RS08345 (NCTC10710_01730) - 1727590..1728990 (-) 1401 WP_138083011.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGK96_RS08350 (NCTC10710_01731) - 1729024..1729665 (-) 642 WP_007892962.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 50043.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1127365 FGK96_RS08325 WP_138083003.1 1724178..1725479(-) (comFA/cflA) [Streptococcus porcinus strain NCTC10710]
MECLENLYGRIFTANQISYEAQRIASTKDSFEDDGKDYYCGRCFSKADKDHLLPNGHYYCRWCLVFGRVQSHDKLYYYPA
QPFPKGSYLKWKGTLTPYQESISKQLVENYCLEKRSLVYAVTGAGKTEMIYRVIEEVVNSGKWVALVSPRIDVCIEVHRR
LSRDFSCQIVLMHAESESYHRAPLVIATTHQLLKFYKAFHLIIIDEVDSFPFVDNPLLNRAVISALMEEGRLIYLTATST
KFLEREVTNGKLTKITLPRRFHNKPLIVPDFQLIFNLQRYLDRNKLPHKLFSAIQKQTTLPYPLLIFYPVIEKGQKFYET
LVKAFPNHKIGYVSSQTLKRKELIEDFRRGDLSILVTTTILERGVTIPGVDVFVILAHHRLFTSSSLIQIAGRVGRSVER
PNGKVIFFHEGVSSAMYRARKEIRGLNKEAYGL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=1127365 FGK96_RS08325 WP_138083003.1 1724178..1725479(-) (comFA/cflA) [Streptococcus porcinus strain NCTC10710]
ATGGAATGTTTAGAGAATTTATATGGTCGCATATTTACAGCTAATCAAATTAGCTATGAAGCACAAAGGATTGCAAGTAC
TAAAGATAGTTTTGAGGATGATGGTAAGGATTATTATTGCGGACGTTGCTTTAGTAAAGCTGATAAAGACCACTTACTAC
CTAATGGACACTATTATTGCAGATGGTGTTTAGTTTTTGGTCGAGTGCAAAGTCATGACAAGCTCTATTATTACCCTGCT
CAGCCATTTCCTAAAGGGAGTTATCTTAAGTGGAAAGGAACTTTAACACCTTATCAAGAGAGTATTTCTAAACAATTGGT
TGAAAATTATTGTTTAGAAAAACGGAGTTTGGTTTATGCTGTTACAGGAGCAGGTAAAACAGAGATGATCTATAGAGTTA
TCGAAGAAGTAGTCAATAGTGGGAAATGGGTGGCATTAGTCAGTCCGAGAATAGATGTCTGTATTGAAGTTCATAGGCGC
TTAAGCCGTGACTTCTCATGTCAGATTGTTTTGATGCATGCAGAGTCAGAAAGTTATCATAGAGCTCCGCTTGTCATTGC
AACAACTCATCAGTTATTGAAATTTTATAAGGCATTTCATTTGATTATTATTGATGAAGTAGATTCTTTTCCATTTGTTG
ACAATCCACTCCTAAATCGTGCTGTTATATCAGCGTTGATGGAGGAAGGTCGGTTAATTTATTTGACAGCTACCTCTACA
AAGTTTTTAGAGAGGGAAGTGACGAATGGTAAACTGACCAAAATAACTCTACCGAGACGATTTCATAATAAACCTTTGAT
AGTACCTGATTTTCAATTGATTTTTAATCTTCAGCGATATTTGGATAGAAATAAACTCCCTCATAAACTATTTTCTGCTA
TTCAAAAACAAACTACTTTGCCCTATCCACTTTTAATTTTTTATCCTGTCATAGAGAAAGGTCAAAAATTTTATGAAACT
TTAGTAAAAGCATTTCCTAACCACAAGATAGGATATGTAAGCAGTCAAACGCTCAAACGTAAAGAATTAATTGAGGACTT
TCGTCGAGGTGACCTATCAATTCTTGTTACGACTACGATTCTAGAAAGAGGTGTTACTATTCCTGGTGTAGATGTCTTTG
TAATATTAGCGCATCATCGCCTTTTTACATCTTCAAGTCTCATTCAAATAGCTGGGCGGGTTGGGAGATCTGTCGAACGC
CCAAATGGTAAAGTAATCTTTTTTCACGAGGGAGTGAGTTCTGCTATGTATAGAGCAAGGAAAGAAATAAGAGGTTTAAA
TAAGGAAGCTTATGGGTTATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-238)

Helicase conserved C-terminal domain (Helicase_C)

(299-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae D39

53.555

97.46

0.522
  comFA/cflA Streptococcus pneumoniae R6

53.555

97.46

0.522
  comFA/cflA Streptococcus pneumoniae TIGR4

53.555

97.46

0.522
  comFA/cflA Streptococcus pneumoniae Rx1

53.555

97.46

0.522
  comFA/cflA Streptococcus mitis SK321

51.628

99.307

0.513
  comFA/cflA Streptococcus mitis NCTC 12261

51.395

99.307

0.51
  comFA Lactococcus lactis subsp. cremoris KW2

47.949

90.069

0.432
  comFA Latilactobacillus sakei subsp. sakei 23K

37.443

100

0.379

Multiple sequence alignment