Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   FGL04_RS10640 Genome accession   NZ_LR594035
Coordinates   2067411..2068184 (+) Length   257 a.a.
NCBI ID   WP_138069135.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2062411..2073184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS10630 (NCTC5385_02298) rlmH 2065456..2065935 (-) 480 WP_138069188.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL04_RS10635 (NCTC5385_02299) htrA 2066132..2067334 (+) 1203 WP_007891607.1 S1C family serine protease Regulator
  FGL04_RS10640 (NCTC5385_02300) spo0J 2067411..2068184 (+) 774 WP_138069135.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29323.78 Da        Isoelectric Point: 7.1890

>NTDB_id=1127325 FGL04_RS10640 WP_138069135.1 2067411..2068184(+) (spo0J) [Streptococcus pseudoporcinus strain NCTC5385]
MTEELKEIRVEDIVANPHQPRLHFDHEELKELANSIKINGLIQPIIVRPSEIYGYELIAGERRLKASQLAGLEKVPAVIK
NISTTESMHQAIVENLQRSDLNPIEEAKAFQNILTKKQLTHEQLATFMGKSRPYITNSIRLLQLPDIILTALEEGKISSG
HARSLVTLDNSQDQEDYFHRIIDQDLSVRQTEQLVKLKKQAKKPQINTNIFIKALEEELAKSLGLPIHIKLKKDGSGQLS
CFFQNEEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1127325 FGL04_RS10640 WP_138069135.1 2067411..2068184(+) (spo0J) [Streptococcus pseudoporcinus strain NCTC5385]
ATGACAGAAGAATTAAAAGAAATAAGAGTAGAAGATATTGTTGCTAACCCACATCAACCTAGACTTCACTTTGATCATGA
AGAATTAAAGGAATTAGCAAACTCTATTAAAATAAATGGACTCATACAACCTATTATTGTCAGACCATCCGAAATTTACG
GCTATGAATTAATTGCGGGTGAGAGACGTTTAAAGGCATCTCAGTTAGCTGGTTTAGAAAAAGTTCCTGCAGTTATTAAA
AATATTTCAACAACTGAAAGTATGCATCAAGCAATCGTGGAAAATCTTCAACGATCAGACTTAAATCCAATTGAAGAAGC
AAAAGCTTTTCAAAATATTCTTACTAAAAAGCAATTAACACATGAACAATTAGCTACCTTTATGGGCAAATCACGTCCCT
ACATCACTAATAGTATCCGCCTTTTACAATTACCTGATATCATTTTGACTGCACTAGAAGAGGGAAAAATTAGTTCTGGG
CATGCACGTAGTTTAGTTACTTTGGATAATAGTCAAGATCAAGAGGATTATTTTCATCGCATTATTGACCAAGACCTCAG
CGTACGTCAGACTGAGCAGCTGGTAAAATTAAAAAAACAAGCTAAAAAGCCGCAGATAAACACAAATATTTTTATTAAAG
CCCTCGAAGAAGAACTTGCTAAATCACTAGGCCTACCCATTCATATTAAACTAAAAAAAGATGGTAGTGGACAATTATCT
TGCTTTTTTCAGAATGAAGAAGAACTTAACAGAATTATCAACAAACTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.42

100

0.564


Multiple sequence alignment