Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   FGL04_RS08185 Genome accession   NZ_LR594035
Coordinates   1591555..1591863 (-) Length   102 a.a.
NCBI ID   WP_333473208.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586555..1596863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS08160 (NCTC5385_01779) - 1586626..1587123 (-) 498 Protein_1605 ATP-binding cassette domain-containing protein -
  FGL04_RS08165 (NCTC5385_01781) - 1587207..1588312 (+) 1106 WP_138068165.1 IS3 family transposase -
  FGL04_RS08170 (NCTC5385_01782) - 1588354..1589721 (-) 1368 Protein_1607 peptide cleavage/export ABC transporter -
  FGL04_RS10795 (NCTC5385_01783) - 1589992..1590135 (+) 144 WP_171011257.1 hypothetical protein -
  FGL04_RS11375 - 1590176..1590409 (-) 234 WP_138069171.1 GHKL domain-containing protein -
  FGL04_RS08180 (NCTC5385_01784) - 1590370..1590996 (-) 627 WP_138068841.1 hypothetical protein -
  FGL04_RS08185 comE/blpR 1591555..1591863 (-) 309 WP_333473208.1 LytTR family DNA-binding domain-containing protein Regulator
  FGL04_RS08195 (NCTC5385_01786) - 1592067..1592858 (-) 792 WP_138068842.1 hypothetical protein -
  FGL04_RS08200 (NCTC5385_01787) - 1592913..1593302 (-) 390 WP_138068843.1 hypothetical protein -
  FGL04_RS08205 (NCTC5385_01788) - 1593510..1593668 (-) 159 Protein_1614 NUDIX domain-containing protein -
  FGL04_RS08210 (NCTC5385_01789) - 1593829..1594686 (-) 858 WP_138068845.1 IS982 family transposase -
  FGL04_RS08215 (NCTC5385_01790) - 1594821..1595369 (-) 549 WP_138068846.1 TetR/AcrR family transcriptional regulator -
  FGL04_RS08220 (NCTC5385_01791) - 1595478..1596110 (+) 633 WP_138068847.1 HXXEE domain-containing protein -
  FGL04_RS08225 (NCTC5385_01792) - 1596130..1596774 (+) 645 WP_225247820.1 HXXEE domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 12098.85 Da        Isoelectric Point: 9.4537

>NTDB_id=1127314 FGL04_RS08185 WP_333473208.1 1591555..1591863(-) (comE/blpR) [Streptococcus pseudoporcinus strain NCTC5385]
MEKTLHTISEDAFVYKTEKVHVQVPFKDILYFETSQTVHKVNLVTKNGQMEFYGKISDIGKSDTRLFQSHRSFVVNPENI
TKVDRKNRIIYFEKNRSCFFQC

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1127314 FGL04_RS08185 WP_333473208.1 1591555..1591863(-) (comE/blpR) [Streptococcus pseudoporcinus strain NCTC5385]
ATTGAAAAGACATTACATACTATTTCAGAAGATGCATTTGTTTATAAGACGGAAAAAGTCCATGTTCAAGTACCATTTAA
AGATATACTTTATTTTGAAACATCTCAGACGGTTCATAAAGTTAATTTAGTTACGAAAAATGGCCAAATGGAATTTTATG
GTAAGATTTCTGATATTGGGAAGTCAGATACAAGGCTATTTCAATCACATCGTTCCTTTGTTGTAAATCCAGAAAATATT
ACCAAGGTGGATAGAAAAAATAGAATTATTTATTTTGAAAAAAATAGAAGTTGTTTTTTTCAATGTTGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(22-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.945

89.216

0.49
  comE/comE1 Streptococcus equinus JB1

48.913

90.196

0.441

Multiple sequence alignment