Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   FGL00_RS11090 Genome accession   NZ_LR594034
Coordinates   57136..57231 (+) Length   31 a.a.
NCBI ID   WP_198455558.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 52136..62231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS00335 (NCTC8546_00068) - 52660..54144 (+) 1485 WP_232043391.1 DUF262 domain-containing protein -
  FGL00_RS00340 (NCTC8546_00069) purB 54704..55996 (+) 1293 WP_022554088.1 adenylosuccinate lyase -
  FGL00_RS00345 (NCTC8546_00070) comR 56138..57049 (+) 912 WP_012766420.1 XRE family transcriptional regulator Regulator
  FGL00_RS11090 (NCTC8546_00071) comS 57136..57231 (+) 96 WP_198455558.1 quorum-sensing system DWW-type pheromone Regulator
  FGL00_RS00350 (NCTC8546_00072) ruvB 57284..58282 (+) 999 WP_015057190.1 Holliday junction branch migration DNA helicase RuvB -
  FGL00_RS00355 (NCTC8546_00073) - 58417..58848 (+) 432 WP_048327929.1 low molecular weight protein-tyrosine-phosphatase -
  FGL00_RS00360 (NCTC8546_00074) - 58877..59278 (+) 402 WP_003049089.1 MORN repeat-containing protein -
  FGL00_RS00365 (NCTC8546_00075) - 59275..61050 (+) 1776 WP_003059359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3929.72 Da        Isoelectric Point: 10.1669

>NTDB_id=1127271 FGL00_RS11090 WP_198455558.1 57136..57231(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MFKRYHYYFILTAMLAFKAAQMISQVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1127271 FGL00_RS11090 WP_198455558.1 57136..57231(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGTTCAAAAGATATCACTACTATTTTATACTTACTGCTATGTTAGCATTTAAAGCAGCTCAGATGATAAGTCAAGTGGA
TTGGTGGCGTTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

61.29

100

0.613
  comS Streptococcus pyogenes MGAS315

38.71

100

0.387

Multiple sequence alignment