Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FGL10_RS09220 Genome accession   NZ_LR590477
Coordinates   1703320..1704828 (-) Length   502 a.a.
NCBI ID   WP_036475240.1    Uniprot ID   -
Organism   Neisseria lactamica strain NCTC10617     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698320..1709828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS09200 (NCTC10617_01609) - 1698357..1699583 (+) 1227 WP_003711227.1 PilT/PilU family type 4a pilus ATPase -
  FGL10_RS09205 (NCTC10617_01610) yccS 1699675..1701825 (+) 2151 WP_003711226.1 YccS family putative transporter -
  FGL10_RS09215 (NCTC10617_01611) - 1702711..1702980 (-) 270 WP_013448172.1 DUF3079 domain-containing protein -
  FGL10_RS09220 (NCTC10617_01612) pilA 1703320..1704828 (-) 1509 WP_036475240.1 signal recognition particle-docking protein FtsY Machinery gene
  FGL10_RS09225 (NCTC10617_01613) msrAB 1704974..1706542 (+) 1569 WP_003710740.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  FGL10_RS09230 (NCTC10617_01614) - 1706648..1707133 (-) 486 WP_003710738.1 CinA family protein -
  FGL10_RS09235 (NCTC10617_01615) - 1707159..1708007 (-) 849 WP_003710736.1 mechanosensitive ion channel family protein -
  FGL10_RS09240 (NCTC10617_01616) - 1708102..1709103 (-) 1002 WP_003710734.1 thiamine ABC transporter substrate-binding protein -
  FGL10_RS09250 (NCTC10617_01617) - 1709302..1709574 (+) 273 WP_036470225.1 spore cortex protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53504.74 Da        Isoelectric Point: 4.3957

>NTDB_id=1126945 FGL10_RS09220 WP_036475240.1 1703320..1704828(-) (pilA) [Neisseria lactamica strain NCTC10617]
MFSFFRRKKKQETPAPEEAQIQETAVKAESEVAQIVENIKEDAESLTESVKGRVESAVETVSGAVEQVKETVAEMPSEAA
EAAEKAAEYVESAKEAVAETVSGAVEQVKEAVAAMPSEAVEKAAECVESAKEAVVETVSKAVEQVQETVAAMPSEAGEAA
EKAAEQVEAVKETVAETVSEAVEQVQEAVAEAVATTEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELE
TVLITGDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG
KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLH
LMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIG
VGEGIDDLRPFDARAFIDALLD

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1126945 FGL10_RS09220 WP_036475240.1 1703320..1704828(-) (pilA) [Neisseria lactamica strain NCTC10617]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAATTCAGGAAACCGCAGTAAA
AGCGGAATCTGAAGTTGCTCAAATAGTTGAAAATATTAAAGAAGATGCTGAATCTTTAACGGAAAGCGTCAAAGGGCGGG
TCGAATCTGCCGTTGAAACTGTCAGCGGTGCGGTTGAACAGGTAAAGGAAACCGTTGCCGAGATGCCGTCTGAAGCGGCG
GAAGCGGCTGAAAAAGCAGCGGAATATGTTGAATCCGCAAAAGAAGCCGTTGCCGAAACCGTCAGCGGTGCGGTTGAACA
AGTAAAGGAAGCTGTTGCCGCGATGCCGTCTGAAGCGGTTGAAAAAGCGGCGGAATGCGTTGAGTCCGCAAAAGAAGCAG
TCGTTGAAACCGTCAGCAAGGCTGTTGAGCAGGTTCAAGAAACCGTTGCCGCGATGCCGTCTGAAGCAGGGGAAGCGGCT
GAAAAAGCAGCGGAACAAGTCGAAGCGGTGAAAGAAACTGTTGCCGAAACCGTCAGCGAGGCTGTCGAGCAAGTTCAAGA
AGCCGTTGCGGAAGCCGTTGCAACAACTGAAGAACACAAGCTCAGTTGGGCGGCGCGTTTGAAACAAGGTTTGACCAAAT
CGCGCGACAAAATGGCGAAATCGCTGGCGGGCGTGTTCGGCGGCGGACAAATCGACGAAGATTTATACGAAGAGCTGGAA
ACCGTGCTGATTACCGGCGATATGGGCATGGAAGCCACCGAATACCTGATGAAAGACGTGCGCGACCGCGTCAGTCTCAA
AGGGCTGAAAGACGGCAACGAATTGCGCGGCGCGTTGAAAGAAGCCTTGTACGACCTGATTAAGCCTTTGGAAAAACCGC
TGGTCTTGCCCGAAACCAAAGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGCGCGGGCAAAACCACGTCTATTGGC
AAACTCGCCAAATATTTCCAAGCGCAGGGCAAATCTGTGCTGCTTGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGTGA
GCAGCTTCAAGCTTGGGGCGAACGCAACAACGTAACCGTGATTTCGCAAACCACGGGCGATTCCGCAGCCGTCTGCTTCG
ATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCAT
TTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAAAAAGCTATGCCCGACGCGCCGCACGAAATCATCGTCGTCCT
CGATGCCAACATCGGGCAAAACGCCGTCAACCAAGTTAAAGCCTTTGACGACGCATTGGGGCTGACCGGCTTAATCGTAA
CCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTCGCCTCCGACCGTCCTATCCCCGTCCGCTACATCGGC
GTGGGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTATTGACGCGCTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(302-501)

SRP54-type protein, helical bundle domain (SRP54_N)

(217-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

90.649

76.693

0.695

Multiple sequence alignment