Detailed information    

insolico Bioinformatically predicted

Overview


Name   recB   Type   Machinery gene
Locus tag   FGL10_RS01335 Genome accession   NZ_LR590477
Coordinates   232677..236291 (-) Length   1204 a.a.
NCBI ID   WP_003710950.1    Uniprot ID   D0WCE7
Organism   Neisseria lactamica strain NCTC10617     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 176716..236338 232677..236291 within 0


Gene organization within MGE regions


Location: 176716..236338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS01040 (NCTC10617_00181) rfbD 176924..177787 (-) 864 WP_003708034.1 dTDP-4-dehydrorhamnose reductase -
  FGL10_RS01045 (NCTC10617_00182) - 177993..178856 (+) 864 WP_003708035.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FGL10_RS01055 (NCTC10617_00183) pnp 179090..181213 (+) 2124 WP_003708039.1 polyribonucleotide nucleotidyltransferase -
  FGL10_RS01060 (NCTC10617_00184) - 181286..181954 (-) 669 WP_003708040.1 sulfite exporter TauE/SafE family protein -
  FGL10_RS01065 (NCTC10617_00185) - 181951..182265 (-) 315 WP_003708042.1 hypothetical protein -
  FGL10_RS01070 (NCTC10617_00186) - 182456..182743 (-) 288 WP_003708044.1 barstar family protein -
  FGL10_RS01080 (NCTC10617_00187) dapF 182858..183709 (+) 852 WP_003708046.1 diaminopimelate epimerase -
  FGL10_RS01085 (NCTC10617_00188) - 183706..184311 (+) 606 WP_003708048.1 hypothetical protein -
  FGL10_RS01090 (NCTC10617_00190) cysK 184507..185439 (+) 933 WP_036469372.1 cysteine synthase A -
  FGL10_RS01100 (NCTC10617_00191) - 185756..186655 (+) 900 WP_003708052.1 DMT family transporter -
  FGL10_RS11920 - 186701..186850 (+) 150 WP_003708054.1 hypothetical protein -
  FGL10_RS01105 (NCTC10617_00192) lepB 187069..188088 (-) 1020 WP_003708057.1 signal peptidase I -
  FGL10_RS01110 (NCTC10617_00193) lepA 188233..190026 (-) 1794 WP_003708059.1 translation elongation factor 4 -
  FGL10_RS01115 (NCTC10617_00194) - 190171..190872 (-) 702 WP_003708062.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  FGL10_RS01120 (NCTC10617_00195) pilU 191038..192168 (+) 1131 WP_036469395.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FGL10_RS01125 (NCTC10617_00196) - 192203..193180 (+) 978 WP_003708066.1 DNA polymerase III subunit delta' -
  FGL10_RS01130 (NCTC10617_00197) - 193184..193534 (+) 351 WP_003708068.1 PilZ domain-containing protein -
  FGL10_RS01135 (NCTC10617_00198) - 193539..194318 (+) 780 WP_003708070.1 TatD family hydrolase -
  FGL10_RS01140 (NCTC10617_00199) - 194519..194977 (+) 459 WP_003708074.1 RNA-guided endonuclease InsQ/TnpB family protein -
  FGL10_RS01150 - 195292..195450 (-) 159 Protein_205 transposase -
  FGL10_RS01155 (NCTC10617_00200) - 195606..202532 (+) 6927 WP_036474987.1 hemagglutinin repeat-containing protein -
  FGL10_RS01160 - 202513..202827 (+) 315 WP_003712152.1 hypothetical protein -
  FGL10_RS01165 (NCTC10617_00201) - 202991..203449 (+) 459 WP_003711517.1 protein-lysine palmitoyltransferase -
  FGL10_RS12890 - 203504..205291 (+) 1788 Protein_209 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  FGL10_RS01180 (NCTC10617_00204) - 205628..206917 (-) 1290 WP_036470677.1 type II toxin-antitoxin system HipA family toxin -
  FGL10_RS01185 (NCTC10617_00205) - 206929..207945 (-) 1017 WP_003711434.1 IS1595 family transposase -
  FGL10_RS01195 (NCTC10617_00206) - 208451..208801 (+) 351 WP_003711431.1 helix-turn-helix domain-containing protein -
  FGL10_RS01200 - 208705..209583 (+) 879 WP_080718803.1 IS3 family transposase -
  FGL10_RS01205 (NCTC10617_00208) - 209599..210045 (+) 447 Protein_214 transposase -
  FGL10_RS12980 (NCTC10617_00209) - 210234..210356 (+) 123 WP_003710898.1 hypothetical protein -
  FGL10_RS12985 - 210375..210782 (+) 408 WP_415087386.1 CRISPR-associated endonuclease Cas3'' -
  FGL10_RS12990 (NCTC10617_00210) - 210703..211037 (+) 335 Protein_217 CRISPR-associated helicase/endonuclease Cas3 -
  FGL10_RS01215 (NCTC10617_00211) - 211086..214646 (+) 3561 WP_036474990.1 SIR2 family NAD-dependent protein deacylase -
  FGL10_RS01220 (NCTC10617_00212) cas5c 214732..215406 (+) 675 WP_036470299.1 type I-C CRISPR-associated protein Cas5c -
  FGL10_RS01225 (NCTC10617_00213) - 215403..215898 (+) 496 Protein_220 type I-C CRISPR-associated protein Cas8c/Csd1 -
  FGL10_RS01230 (NCTC10617_00214) - 216030..216470 (-) 441 WP_036470302.1 hypothetical protein -
  FGL10_RS01235 (NCTC10617_00215) - 216470..217561 (-) 1092 WP_050774467.1 IS1595 family transposase -
  FGL10_RS01240 (NCTC10617_00216) - 217656..217886 (+) 231 WP_003710914.1 DUF6471 domain-containing protein -
  FGL10_RS01245 (NCTC10617_00217) - 217911..219188 (+) 1278 WP_003710916.1 type II toxin-antitoxin system HipA family toxin -
  FGL10_RS01250 (NCTC10617_00218) - 219583..220863 (+) 1281 WP_003710918.1 ATP-binding protein -
  FGL10_RS12415 (NCTC10617_00219) - 221071..221505 (+) 435 WP_003710920.1 RNA-guided endonuclease InsQ/TnpB family protein -
  FGL10_RS12420 (NCTC10617_00220) - 221506..222207 (+) 702 WP_003710923.1 RNA-guided endonuclease InsQ/TnpB family protein -
  FGL10_RS01265 (NCTC10617_00221) grxD 222704..223015 (+) 312 WP_002241342.1 Grx4 family monothiol glutaredoxin -
  FGL10_RS01275 (NCTC10617_00222) upp 223121..223747 (+) 627 WP_002242442.1 uracil phosphoribosyltransferase -
  FGL10_RS01280 (NCTC10617_00223) - 223770..224087 (+) 318 WP_003710925.1 DUF2322 family protein -
  FGL10_RS01285 (NCTC10617_00224) - 224224..224646 (+) 423 WP_003710927.1 protein Gly1ORF1 -
  FGL10_RS01290 (NCTC10617_00225) - 224664..225444 (+) 781 Protein_232 uroporphyrinogen-III synthase -
  FGL10_RS01295 (NCTC10617_00226) - 225431..226792 (+) 1362 WP_036474993.1 uroporphyrinogen-III C-methyltransferase -
  FGL10_RS01300 (NCTC10617_00227) - 226789..228012 (+) 1224 WP_003710936.1 heme biosynthesis protein HemY -
  FGL10_RS01305 (NCTC10617_00228) - 228045..228485 (+) 441 WP_003710937.1 hypothetical protein -
  FGL10_RS01310 (NCTC10617_00229) hemE 228639..229703 (+) 1065 WP_003710939.1 uroporphyrinogen decarboxylase -
  FGL10_RS01315 (NCTC10617_00230) radA 229893..231272 (+) 1380 WP_118778960.1 DNA repair protein RadA Machinery gene
  FGL10_RS01325 (NCTC10617_00231) - 231548..232027 (-) 480 WP_036470308.1 DUF302 domain-containing protein -
  FGL10_RS01330 (NCTC10617_00232) - 232279..232638 (-) 360 WP_003710949.1 rhodanese-like domain-containing protein -
  FGL10_RS01335 (NCTC10617_00233) recB 232677..236291 (-) 3615 WP_003710950.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence


Protein


Download         Length: 1204 a.a.        Molecular weight: 134960.37 Da        Isoelectric Point: 5.2865

>NTDB_id=1126918 FGL10_RS01335 WP_003710950.1 232677..236291(-) (recB) [Neisseria lactamica strain NCTC10617]
MSASIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDNVLQVLE
SKEIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQTDLPQARDAALAT
WQNLCGNLAELKETFWRIHPLLNGNSYRKNSFAELFDALEQKALSPDLPFLEAKLHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAGDAQHRYTLATNYRSHSALIGSIG
ALFRLKERPFVLENIGYSEVDAARAESRLSPERTAVQIRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQIYDREKDGIAMLKRNW
QRLTDNAPSGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRQSQTPDDGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYCLSDIPPEYRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMICQDPDGNICVI
DYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRRQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=1126918 FGL10_RS01335 WP_003710950.1 232677..236291(-) (recB) [Neisseria lactamica strain NCTC10617]
ATGTCTGCAAGCATCCAAGCATTCGACCCGCTGACCGTCCCCATTTCCGGCACCAACCTGATTGAAGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACACGTTTGATCGTATTAGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCACGTTTGGACAATGTGTTACAAGTTTTAGAA
AGCAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGAACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAAGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCGGCGACCCTGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAAACCGATTTGCCGCAAGCCCGGGATGCCGCTTTGGCAACT
TGGCAAAACCTTTGCGGAAATCTGGCTGAATTAAAAGAAACTTTTTGGCGCATCCACCCCCTTTTAAACGGCAATTCGTA
TCGGAAAAACAGTTTTGCCGAATTGTTTGACGCGTTGGAACAAAAAGCCCTGTCGCCGGATTTGCCCTTTTTGGAGGCAA
AGCTGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAATGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATATCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGAGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGATATTTACGCCTACCTGC
AAGCCGCCGGAGACGCGCAACACCGCTACACGCTCGCCACCAACTACCGCAGCCATTCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGATGCGGCGCGTGCCGAAAG
CAGGCTGTCCCCCGAACGCACCGCCGTACAAATCCGCTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGCTGCAGTCGGGCGATATTGCCGTGCTGGTCCGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCACTCGACAACTG
GAATCAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATTTCCAACTGCTCGAACTGCTTGCTGCCGAAGACGCGCAAAACCGAAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTTGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACTATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAGGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCAAATCTATGACCGGGAAAAGGACGGCATCGCGATGCTCAAACGCAACTGG
CAGCGTTTGACGGACAACGCCCCTTCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCTTTAAGCCGCCAAAGCCAAACGCCCGACGACGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATCACCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACTGCCTGTCTGACATTCCGCCCGAGTACCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCTGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTGTCGATATGATCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAATCAAACCACCTCGGCACGGATGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCAGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D0WCE7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

92.027

100

0.92


Multiple sequence alignment