Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FGK94_RS08380 Genome accession   NZ_LR590471
Coordinates   1770520..1771842 (+) Length   440 a.a.
NCBI ID   WP_043030075.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765520..1776842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS08355 (NCTC11854_01707) - 1765955..1766596 (+) 642 WP_043030077.1 response regulator transcription factor -
  FGK94_RS08360 (NCTC11854_01708) - 1766629..1768029 (+) 1401 WP_043030076.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGK94_RS08365 (NCTC11854_01709) - 1768029..1768391 (+) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -
  FGK94_RS08370 (NCTC11854_01710) cysK 1768776..1769702 (-) 927 WP_043026426.1 cysteine synthase A -
  FGK94_RS08375 (NCTC11854_01711) - 1769823..1770464 (-) 642 WP_043026424.1 YigZ family protein -
  FGK94_RS08380 (NCTC11854_01712) comFA/cflA 1770520..1771842 (+) 1323 WP_043030075.1 DEAD/DEAH box helicase Machinery gene
  FGK94_RS08385 (NCTC11854_01713) - 1771901..1772482 (+) 582 WP_080312440.1 ComF family protein -
  FGK94_RS08390 (NCTC11854_01714) hpf 1772558..1773106 (+) 549 WP_014623350.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50005.15 Da        Isoelectric Point: 9.6190

>NTDB_id=1126902 FGK94_RS08380 WP_043030075.1 1770520..1771842(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MENIENYYGRLLPERQCPKAVSAWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKGHYLRWQGQLTTYQVAVSHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEVYHRSPIIVATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
KDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPIIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1126902 FGK94_RS08380 WP_043030075.1 1770520..1771842(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAAGGCAATGCCCAAAGGCTGTTTCTGCCTGGGCTTGCAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGTTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTACTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGGCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACAACATATCAGGTAGCTGTCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACACTGGTTCATGCCGTTACCGGCGCTGGTAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAGGTCTGCCTTATGCATGCTGAGTCAGAGGTTTATCATAGAAGCCCCATTATCGTTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTCCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AAAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTGGCAAGAAGATTCCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACCGGCTATCCTCTTTTAATCTTTTTTCCGATTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
TTGCAAAAGTATTTTCCTAAGGAAACTATTGCTCATGCTTCCAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCAACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAAATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCTGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTTAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-396)

DEAD/DEAH box helicase (DEAD)

(111-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae Rx1

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae D39

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae TIGR4

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis SK321

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis NCTC 12261

52.471

96.591

0.507
  comFA Lactococcus lactis subsp. cremoris KW2

48.214

89.091

0.43

Multiple sequence alignment