Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL31_RS00770 Genome accession   NZ_LR590470
Coordinates   161126..162514 (+) Length   462 a.a.
NCBI ID   WP_099369359.1    Uniprot ID   -
Organism   Sphingobacterium daejeonense strain NCTC13534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 156126..167514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL31_RS00740 (NCTC13534_00166) - 156325..156780 (+) 456 WP_138089414.1 hypothetical protein -
  FGL31_RS00745 (NCTC13534_00167) - 156861..158858 (+) 1998 WP_138089415.1 sensor histidine kinase -
  FGL31_RS00750 (NCTC13534_00168) - 158957..159430 (+) 474 WP_099369355.1 DUF4293 domain-containing protein -
  FGL31_RS00755 (NCTC13534_00169) - 159441..159914 (+) 474 WP_138089416.1 hypothetical protein -
  FGL31_RS00760 (NCTC13534_00170) - 159924..160550 (-) 627 WP_099369357.1 hypothetical protein -
  FGL31_RS00765 (NCTC13534_00171) - 160550..161056 (-) 507 WP_099369358.1 RNA polymerase sigma factor -
  FGL31_RS00770 (NCTC13534_00172) radA 161126..162514 (+) 1389 WP_099369359.1 DNA repair protein RadA Machinery gene
  FGL31_RS00775 (NCTC13534_00173) - 162582..163709 (-) 1128 WP_138089417.1 TlpA disulfide reductase family protein -
  FGL31_RS00780 (NCTC13534_00174) - 163751..164581 (-) 831 WP_138089418.1 YgcG family protein -
  FGL31_RS00785 (NCTC13534_00175) - 164588..165022 (-) 435 WP_099369362.1 TPM domain-containing protein -
  FGL31_RS00790 (NCTC13534_00176) - 165107..165685 (-) 579 WP_099369363.1 LemA family protein -
  FGL31_RS00795 (NCTC13534_00177) - 165837..167385 (+) 1549 Protein_172 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51059.50 Da        Isoelectric Point: 6.5091

>NTDB_id=1126850 FGL31_RS00770 WP_099369359.1 161126..162514(+) (radA) [Sphingobacterium daejeonense strain NCTC13534]
MAKSKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTTSTPGVQKRANKAAVIHEIVYSEEQRIHA
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLSQNSNANCYILTETSM
QNIFKQIDQVEPNVVVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGIAVAAMLEGMRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAAIISSQQDIALESNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDIKRYQILVRPVATLEDIFRILFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1126850 FGL31_RS00770 WP_099369359.1 161126..162514(+) (radA) [Sphingobacterium daejeonense strain NCTC13534]
ATGGCAAAATCAAAATCAGCATATTTCTGTCAATCCTGTGGATATGAATCTCCTAAATGGCTAGGTCAATGTCCTTCATG
TAAACAGTGGAATACTTTCGTAGAGGAAGTTGTGGAAAAGGCATCCAGCAGAGTGCCTGAATGGAGAAGCACAACCTCAA
CCCCAGGTGTACAGAAAAGAGCAAACAAAGCTGCAGTAATACATGAAATCGTATATTCTGAAGAACAAAGAATCCATGCT
CCAGACAAAGAATTCAATCGCGTACTGGGAGGAGGAATTGTACCTGGATCGTTGGTCCTGATCGGAGGGGAACCCGGAAT
CGGTAAATCAACTCTAATGTTACAACTTGCATTATCAATTCCGAAAGTCAAAACACTTTATATCTCAGGCGAGGAAAGCG
AACAGCAAATAAAAATGAGGGCCGAACGGTTGTCACAAAACTCAAATGCTAATTGCTATATATTGACGGAAACGTCAATG
CAGAATATCTTTAAACAGATTGACCAAGTGGAACCCAATGTCGTTGTCATTGATTCTATCCAAACGCTGCACTCGGCACA
GATTGAATCAGCACCCGGCTCGGTTTCCCAGGTCAGAGAATGTACCGCTGAATTGTTGCGCTTCGCAAAAGAAACAAATA
CACCGGTATTTATAGTCGGCCATATCACCAAGGACGGATCTATCGCCGGACCAAAAGTATTGGAACATATGGTGGATACG
GTTTTGCAGTTTGAAGGAGATCGGAACCATGTATACCGTATTTTACGAGCAGTAAAAAACAGATTTGGATCATCCTCGGA
ATTAGGAATTTATGAAATGCAGGGTTCTGGATTAAGAGAAGTTTCCAATCCTTCAGAAATTATGCTTTCCCAAAGAGAAG
AGCAGGTCAGTGGAATTGCTGTAGCGGCCATGTTAGAGGGTATGAGGCCCTTAATGATTGAAGTGCAGGCACTGGTCTCA
AATTCAGCGTATGGAACGCCACAGCGAAGCTCTACAGGTTTTGATACAAAGAGATTGAACATGTTGCTGGCAGTCCTGGA
AAAAAGATTCGGATTCAGATTGAGTGCACAGGATGTATTCTTGAATATTGCAGGTGGATTGAGAGTCGAAGACCCAGCAA
TTGACCTCGCCGTTATTGCTGCAATCATCTCTTCGCAACAAGATATAGCTTTGGAATCTAATATTACATTTGCCGGTGAA
GTAGGCCTCTCCGGGGAAATAAGAGCTGTAAATAGAATTGAACAAAGAATTCAAGAAGCAGAAAAATTAGGGTTCGAACA
GATTTTTATTTCGAAATACAACACCAAAGGATTAGATATTAAAAGATATCAGATATTGGTCAGACCAGTGGCAACATTAG
AGGATATATTCAGAATATTATTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-226)

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.448

100

0.537
  radA Streptococcus pneumoniae Rx1

50

100

0.5
  radA Streptococcus pneumoniae D39

50

100

0.5
  radA Streptococcus pneumoniae R6

50

100

0.5
  radA Streptococcus pneumoniae TIGR4

50

100

0.5
  radA Streptococcus mitis NCTC 12261

50

100

0.5
  radA Streptococcus mitis SK321

50

100

0.5

Multiple sequence alignment