Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E4V70_RS01625 Genome accession   NZ_LR535679
Coordinates   341552..342319 (-) Length   255 a.a.
NCBI ID   WP_122862179.1    Uniprot ID   -
Organism   Campylobacter showae isolate B91_SC     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 336552..347319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4V70_RS01600 queA 337292..338320 (+) 1029 WP_122862184.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E4V70_RS01605 - 338392..339345 (+) 954 WP_232037798.1 hypothetical protein -
  E4V70_RS01610 - 339472..339806 (+) 335 Protein_325 VOC family protein -
  E4V70_RS01615 - 339864..340466 (+) 603 WP_122862182.1 alpha/beta hydrolase -
  E4V70_RS01620 ruvX 340712..341086 (-) 375 WP_122862181.1 Holliday junction resolvase RuvX -
  E4V70_RS01625 dprA 341552..342319 (-) 768 WP_122862179.1 DNA-processing protein DprA Machinery gene
  E4V70_RS01630 - 342316..343941 (-) 1626 WP_122862178.1 divergent polysaccharide deacetylase family protein -
  E4V70_RS01635 ilvC 343942..344964 (-) 1023 WP_122862177.1 ketol-acid reductoisomerase -
  E4V70_RS01640 - 345094..345912 (+) 819 WP_122862176.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 27423.54 Da        Isoelectric Point: 8.2229

>NTDB_id=1126463 E4V70_RS01625 WP_122862179.1 341552..342319(-) (dprA) [Campylobacter showae isolate B91_SC]
MNVLAELPSGLLRLKKPPKKLYFEGNLALLERPMVSIVGSRKASAYTRQCVEALARTLANSGVCVVSGAAIGVDIAAHKG
AYPHTVAVFGNGLNKIYPQSNAKIIKEIYQNALALSEYEPGEPPLAYRFLERNRIVVALSQALVVAQADTRSGSMQSARM
AKELGVPIFTLPQRLGESDGTNELVASGAANLINDFDEFALRFGGKPASAQDDEVIKFCKNGASLDTALAKFGDKIYEYE
LEGKVRISGLTVFAE

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1126463 E4V70_RS01625 WP_122862179.1 341552..342319(-) (dprA) [Campylobacter showae isolate B91_SC]
TTGAACGTCTTAGCCGAGCTTCCTAGCGGTCTTTTGCGTCTTAAAAAGCCGCCGAAAAAGCTCTATTTCGAGGGAAATTT
GGCTCTGCTTGAGCGCCCGATGGTCTCGATCGTGGGTTCAAGAAAGGCAAGCGCCTACACCAGGCAGTGCGTAGAGGCGC
TGGCTAGGACGCTGGCAAACAGCGGCGTTTGCGTAGTTAGCGGTGCGGCTATCGGCGTGGATATCGCCGCGCACAAGGGC
GCGTATCCGCATACGGTCGCCGTTTTTGGCAACGGACTAAATAAAATCTACCCGCAAAGCAACGCCAAAATCATCAAAGA
AATCTACCAAAATGCGCTGGCTCTTAGCGAGTATGAACCAGGCGAACCGCCGCTTGCATATAGATTTTTGGAGCGAAACC
GCATCGTGGTCGCGCTCTCGCAGGCCCTGGTCGTGGCGCAGGCCGATACCAGAAGTGGCTCAATGCAAAGCGCGCGCATG
GCAAAGGAGCTTGGCGTGCCGATATTTACGCTGCCTCAGCGCCTAGGCGAGAGCGACGGGACGAACGAGCTGGTCGCTAG
CGGCGCGGCAAATTTGATAAACGATTTTGACGAATTTGCGCTTCGTTTCGGCGGCAAACCTGCGTCTGCGCAAGACGACG
AGGTGATAAAATTTTGCAAAAACGGCGCGAGTCTCGATACGGCCTTGGCGAAATTCGGCGATAAAATTTACGAATACGAA
CTGGAAGGCAAAGTGCGAATATCTGGGCTTACGGTATTTGCGGAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(6-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.545

90.588

0.494
  dprA Helicobacter pylori 26695

44.788

100

0.455

Multiple sequence alignment