Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   E0F40_RS09990 Genome accession   NZ_LR216065
Coordinates   1859656..1860609 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854656..1865609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS09965 (SAMEA3714487_01889) - 1855418..1856041 (-) 624 WP_000932661.1 hypothetical protein -
  E0F40_RS09970 (SAMEA3714487_01890) jag 1856092..1857078 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  E0F40_RS09975 (SAMEA3714487_01891) - 1857097..1857921 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  E0F40_RS09980 (SAMEA3714487_01892) rnpA 1857896..1858267 (-) 372 WP_000739246.1 ribonuclease P protein component -
  E0F40_RS09985 (SAMEA3714487_01893) - 1858415..1859605 (-) 1191 WP_000167755.1 acetate kinase -
  E0F40_RS09990 (SAMEA3714487_01894) comYH 1859656..1860609 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  E0F40_RS09995 - 1860670..1861257 (-) 588 Protein_1865 class I SAM-dependent methyltransferase -
  E0F40_RS10000 (SAMEA3714487_01897) comGG/cglG 1861394..1861807 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  E0F40_RS10005 (SAMEA3714487_01898) comGF/cglF 1861785..1862246 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  E0F40_RS10010 (SAMEA3714487_01899) comGE/cglE 1862209..1862511 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  E0F40_RS10015 (SAMEA3714487_01900) comGD/cglD 1862474..1862878 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  E0F40_RS10020 (SAMEA3714487_01901) comGC/cglC 1862871..1863137 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  E0F40_RS10025 (SAMEA3714487_01902) - 1863139..1863396 (-) 258 WP_000698513.1 hypothetical protein -
  E0F40_RS10030 (SAMEA3714487_01903) - 1863667..1864623 (-) 957 WP_054385177.1 N-acetylmuramoyl-L-alanine amidase -
  E0F40_RS10035 (SAMEA3714487_01904) - 1864627..1864959 (-) 333 WP_001186216.1 phage holin -
  E0F40_RS10040 (SAMEA3714487_01905) - 1864963..1865262 (-) 300 WP_050203193.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=1126368 E0F40_RS09990 WP_000345084.1 1859656..1860609(-) (comYH) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1126368 E0F40_RS09990 WP_000345084.1 1859656..1860609(-) (comYH) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment