Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   E0F40_RS02460 Genome accession   NZ_LR216065
Coordinates   448079..448810 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 443079..453810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS11610 - 444642..445275 (+) 634 Protein_453 DJ-1/PfpI family protein -
  E0F40_RS02440 (SAMEA3714487_00445) dnaJ 445445..446581 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  E0F40_RS11615 - 446903..447142 (-) 240 WP_001813906.1 hypothetical protein -
  E0F40_RS02450 (SAMEA3714487_00446) - 447304..447591 (-) 288 WP_000777760.1 hypothetical protein -
  E0F40_RS02455 (SAMEA3714487_00447) - 447601..448011 (-) 411 WP_001278301.1 HIT family protein -
  E0F40_RS02460 (SAMEA3714487_00448) pptA 448079..448810 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  E0F40_RS02465 (SAMEA3714487_00449) - 448807..449856 (+) 1050 WP_000653771.1 ABC transporter permease -
  E0F40_RS02470 (SAMEA3714487_00450) - 450024..450353 (-) 330 WP_000132572.1 hypothetical protein -
  E0F40_RS02475 (SAMEA3714487_00451) - 450630..450968 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  E0F40_RS02480 (SAMEA3714487_00452) comE/blpR 450973..451710 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  E0F40_RS02485 (SAMEA3714487_00453) - 451724..453064 (+) 1341 WP_001099895.1 sensor histidine kinase -
  E0F40_RS02490 (SAMEA3714487_00454) blpC 453109..453264 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1126325 E0F40_RS02460 WP_000889923.1 448079..448810(+) (pptA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1126325 E0F40_RS02460 WP_000889923.1 448079..448810(+) (pptA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCATGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment