Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OU5_RS09175 Genome accession   NZ_CP005960
Coordinates   2084091..2084726 (-) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas mandelii JR-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2079091..2089726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU5_RS09140 (OU5_1815) - 2079485..2079955 (-) 471 WP_010461879.1 (2Fe-2S)-binding protein -
  OU5_RS09145 (OU5_1816) murB 2080201..2081220 (-) 1020 WP_010461881.1 UDP-N-acetylmuramate dehydrogenase -
  OU5_RS09150 (OU5_1817) - 2081217..2081681 (-) 465 WP_010461884.1 low molecular weight protein-tyrosine-phosphatase -
  OU5_RS09155 (OU5_1818) kdsB 2081681..2082445 (-) 765 WP_010461886.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OU5_RS09160 (OU5_1819) - 2082442..2082627 (-) 186 WP_010461887.1 Trm112 family protein -
  OU5_RS09165 (OU5_1820) lpxK 2082653..2083663 (-) 1011 WP_010461890.1 tetraacyldisaccharide 4'-kinase -
  OU5_RS09170 (OU5_1821) - 2083663..2084094 (-) 432 WP_010461891.1 ExbD/TolR family protein -
  OU5_RS09175 (OU5_1822) exbB 2084091..2084726 (-) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OU5_RS09180 (OU5_1823) comA 2084825..2087059 (-) 2235 WP_010461895.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OU5_RS09185 (OU5_1824) - 2087195..2087713 (+) 519 WP_010461897.1 DUF2062 domain-containing protein -
  OU5_RS09190 (OU5_1825) - 2087855..2088634 (-) 780 WP_010461900.1 ABC transporter permease -
  OU5_RS09195 (OU5_1826) - 2088631..2089563 (-) 933 WP_010461902.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=112629 OU5_RS09175 WP_010461893.1 2084091..2084726(-) (exbB) [Pseudomonas mandelii JR-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=112629 OU5_RS09175 WP_010461893.1 2084091..2084726(-) (exbB) [Pseudomonas mandelii JR-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCTGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCGGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment