Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   E0F31_RS02565 Genome accession   NZ_LR216064
Coordinates   475659..476390 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 470659..481390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F31_RS02540 - 472277..472681 (+) 405 WP_000343113.1 hypothetical protein -
  E0F31_RS02545 (SAMEA3714520_00471) dnaJ 473025..474161 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  E0F31_RS11325 (SAMEA3714520_00472) - 474483..474722 (-) 240 WP_001813906.1 hypothetical protein -
  E0F31_RS02555 (SAMEA3714520_00473) - 474884..475171 (-) 288 WP_000777760.1 hypothetical protein -
  E0F31_RS02560 (SAMEA3714520_00474) - 475181..475591 (-) 411 WP_001278301.1 HIT family protein -
  E0F31_RS02565 (SAMEA3714520_00475) pptA 475659..476390 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  E0F31_RS02570 (SAMEA3714520_00476) - 476387..477436 (+) 1050 WP_000653770.1 ABC transporter permease -
  E0F31_RS02575 (SAMEA3714520_00477) - 477604..477933 (-) 330 WP_000132572.1 hypothetical protein -
  E0F31_RS02580 (SAMEA3714520_00478) - 478210..478548 (+) 339 WP_000682134.1 LytTR family DNA-binding domain-containing protein -
  E0F31_RS02585 (SAMEA3714520_00479) comE/blpR 478553..479290 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  E0F31_RS02590 (SAMEA3714520_00480) - 479304..480644 (+) 1341 WP_001099895.1 sensor histidine kinase -
  E0F31_RS02595 (SAMEA3714520_00481) blpC 480689..480844 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=1126249 E0F31_RS02565 WP_000889919.1 475659..476390(+) (pptA) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1126249 E0F31_RS02565 WP_000889919.1 475659..476390(+) (pptA) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment