Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   E0F39_RS08280 Genome accession   NZ_LR216060
Coordinates   1544108..1545340 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539108..1550340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS08250 (SAMEA3713867_01566) - 1539295..1540263 (+) 969 WP_000080996.1 NAD(P)/FAD-dependent oxidoreductase -
  E0F39_RS08255 (SAMEA3713867_01567) whiA 1540297..1541208 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  E0F39_RS08260 (SAMEA3713867_01568) - 1541205..1542182 (-) 978 WP_001231095.1 YvcK family protein -
  E0F39_RS08265 (SAMEA3713867_01569) rapZ 1542179..1543069 (-) 891 WP_000163031.1 RNase adapter RapZ -
  E0F39_RS08270 (SAMEA3713867_01570) - 1543121..1543501 (-) 381 WP_001140412.1 RidA family protein -
  E0F39_RS08275 (SAMEA3713867_01571) yihA 1543512..1544099 (-) 588 WP_050198896.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  E0F39_RS08280 (SAMEA3713867_01572) clpX 1544108..1545340 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E0F39_RS12380 (SAMEA3713867_01573) - 1545372..1545542 (-) 171 WP_000442275.1 hypothetical protein -
  E0F39_RS08290 (SAMEA3713867_01574) - 1545542..1546048 (-) 507 WP_000162452.1 dihydrofolate reductase -
  E0F39_RS08295 (SAMEA3713867_01575) - 1546178..1546696 (-) 519 WP_000229874.1 Dps family protein -
  E0F39_RS08300 (SAMEA3713867_01576) lytC 1547193..1548698 (-) 1506 WP_012386833.1 choline binding-anchored murein hydrolase LytC -
  E0F39_RS08305 (SAMEA3713867_01577) tpiA 1548736..1549494 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  E0F39_RS08310 (SAMEA3713867_01578) - 1549592..1550269 (-) 678 WP_000221614.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=1126194 E0F39_RS08280 WP_000106346.1 1544108..1545340(-) (clpX) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1126194 E0F39_RS08280 WP_000106346.1 1544108..1545340(-) (clpX) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTAGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTTAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAGTACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment