Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   E0F39_RS02770 Genome accession   NZ_LR216060
Coordinates   508973..509704 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 503973..514704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS02745 (SAMEA3713867_00512) - 505769..506122 (+) 354 WP_000115730.1 hypothetical protein -
  E0F39_RS02750 (SAMEA3713867_00513) dnaJ 506327..507463 (+) 1137 WP_001865059.1 molecular chaperone DnaJ -
  E0F39_RS12200 - 507797..508036 (-) 240 WP_001813906.1 hypothetical protein -
  E0F39_RS02760 (SAMEA3713867_00514) - 508198..508485 (-) 288 WP_000777760.1 hypothetical protein -
  E0F39_RS02765 (SAMEA3713867_00515) - 508495..508905 (-) 411 WP_001278301.1 HIT family protein -
  E0F39_RS02770 (SAMEA3713867_00516) pptA 508973..509704 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  E0F39_RS02775 (SAMEA3713867_00517) - 509701..510750 (+) 1050 WP_000653751.1 ABC transporter permease -
  E0F39_RS02780 (SAMEA3713867_00518) - 510918..511247 (-) 330 WP_000132572.1 hypothetical protein -
  E0F39_RS02785 (SAMEA3713867_00519) - 511523..511861 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  E0F39_RS02790 (SAMEA3713867_00520) comE/blpR 511866..512603 (+) 738 WP_001219137.1 response regulator transcription factor Regulator
  E0F39_RS02795 (SAMEA3713867_00521) - 512617..513957 (+) 1341 WP_001099893.1 sensor histidine kinase -
  E0F39_RS02800 (SAMEA3713867_00522) blpC 514001..514156 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1126174 E0F39_RS02770 WP_000889923.1 508973..509704(+) (pptA) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1126174 E0F39_RS02770 WP_000889923.1 508973..509704(+) (pptA) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment