Detailed information NTG1126130

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: E0F32_RS09160
• Genome accession: NZ_LR216050
• Coordinates: 1702568..1703494 (-)
• Length: 308 a.a.
• NCBI ID: WP_000103700.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1697568..1708494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0F32_RS09135 (SAMEA3431333_01714)	-	1697613..1698416 (-)	804	WP_024477717.1	ABC transporter ATP-binding protein	-
E0F32_RS09140 (SAMEA3431333_01715)	-	1698429..1699322 (-)	894	WP_024477718.1	ABC transporter permease	-
E0F32_RS09145 (SAMEA3431333_01716)	-	1699334..1699936 (-)	603	WP_024477719.1	ABC transporter substrate-binding protein	-
E0F32_RS09150 (SAMEA3431333_01717)	amiF	1700555..1701481 (-)	927	WP_001291293.1	ATP-binding cassette domain-containing protein	Regulator
E0F32_RS09155 (SAMEA3431333_01718)	amiE	1701492..1702559 (-)	1068	WP_000159556.1	ABC transporter ATP-binding protein	Regulator
E0F32_RS09160 (SAMEA3431333_01719)	amiD	1702568..1703494 (-)	927	WP_000103700.1	oligopeptide ABC transporter permease OppC	Regulator
E0F32_RS09165	-	1703494..1704990 (-)	1497	Protein_1738	ABC transporter permease	-
E0F32_RS09170 (SAMEA3431333_01722)	amiA3	1705057..1707036 (-)	1980	WP_000742232.1	peptide ABC transporter substrate-binding protein	Regulator
E0F32_RS09175 (SAMEA3431333_01723)	-	1707618..1708061 (-)	444	Protein_1740	transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34634.76 Da
• Isoelectric Point: 9.7939

>NTDB_id=1126130 E0F32_RS09160 WP_000103700.1 1702568..1703494(-) (amiD) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1126130 E0F32_RS09160 WP_000103700.1 1702568..1703494(-) (amiD) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTAACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (124-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	83.117	100	0.831
amiD	Streptococcus thermophilus LMG 18311	81.169	100	0.812
amiD	Streptococcus thermophilus LMD-9	81.169	100	0.812