Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   E0F32_RS02565 Genome accession   NZ_LR216050
Coordinates   453952..454683 (-) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 448952..459683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F32_RS02530 (SAMEA3431333_00468) blpC 449500..449628 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  E0F32_RS02535 (SAMEA3431333_00469) - 449699..451039 (-) 1341 WP_001017642.1 sensor histidine kinase -
  E0F32_RS02540 (SAMEA3431333_00470) comE/blpR 451053..451790 (-) 738 WP_001219120.1 response regulator transcription factor Regulator
  E0F32_RS02545 (SAMEA3431333_00471) - 451795..452133 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  E0F32_RS02550 (SAMEA3431333_00472) - 452409..452738 (+) 330 WP_000132572.1 hypothetical protein -
  E0F32_RS02560 (SAMEA3431333_00473) - 452906..453955 (-) 1050 WP_000653771.1 ABC transporter permease -
  E0F32_RS02565 (SAMEA3431333_00474) pptA 453952..454683 (-) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  E0F32_RS02570 (SAMEA3431333_00475) - 454751..455161 (+) 411 WP_001278301.1 HIT family protein -
  E0F32_RS02575 (SAMEA3431333_00476) - 455171..455458 (+) 288 WP_000777753.1 hypothetical protein -
  E0F32_RS02580 - 455620..455814 (+) 195 WP_001808905.1 hypothetical protein -
  E0F32_RS02585 (SAMEA3431333_00477) dnaJ 456148..457284 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=1126101 E0F32_RS02565 WP_000889921.1 453952..454683(-) (pptA) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1126101 E0F32_RS02565 WP_000889921.1 453952..454683(-) (pptA) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACTCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment