Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E0E47_RS15710 Genome accession   NZ_LR215980
Coordinates   3724890..3726314 (+) Length   474 a.a.
NCBI ID   WP_130894123.1    Uniprot ID   -
Organism   Paraprevotella xylaniphila YIT 11841 isolate Paraprevotella xylaniphila 82A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3719890..3731314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E47_RS15695 - 3721014..3722150 (+) 1137 WP_130894120.1 ABC transporter substrate-binding protein -
  E0E47_RS15700 - 3722156..3723196 (+) 1041 WP_130894121.1 iron ABC transporter permease -
  E0E47_RS15705 - 3723196..3724209 (+) 1014 WP_130894122.1 ABC transporter ATP-binding protein -
  E0E47_RS15710 radA 3724890..3726314 (+) 1425 WP_130894123.1 DNA repair protein RadA Machinery gene
  E0E47_RS15715 - 3726337..3727935 (+) 1599 WP_008624310.1 NAD(P)/FAD-dependent oxidoreductase -
  E0E47_RS15720 - 3727932..3728633 (-) 702 WP_008624311.1 outer membrane beta-barrel protein -
  E0E47_RS15725 thrA 3728835..3731264 (+) 2430 WP_130894124.1 bifunctional aspartate kinase/homoserine dehydrogenase I -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 51613.58 Da        Isoelectric Point: 7.3645

>NTDB_id=1126047 E0E47_RS15710 WP_130894123.1 3724890..3726314(+) (radA) [Paraprevotella xylaniphila YIT 11841 isolate Paraprevotella xylaniphila 82A6]
MAKDKTVYVCANCGQESPKWVGRCPACGEWNTFKEFTVRKESVSAIASGGFHQALPGEPLRRRPIPVGQIVTDEEPRLDM
HDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLKMTDKRVLYVSGEESARQLKLRADRLVPRAGGKADGQEGFLS
RSSCMVVCETSLDQIFLHVRNEQPQLVVIDSIQTIMTEAVDSSPGSISQVRECAALLLKFAKESNIPVILIGHINKEGTL
AGPKVLEHIVDAVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTENHEGLSGVAISSAIEGV
RPFLIETQALVSTAAYGTPQRSATGFDLRRLNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVTDPAIDLSVISAVLSSNVD
TGIESGVCMAGEVGLSGEIRPVNRIEQRVAEAAKLGFRRMIVPRHNLQGFDTSKLKIELVPVRKVEEALRALFG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1126047 E0E47_RS15710 WP_130894123.1 3724890..3726314(+) (radA) [Paraprevotella xylaniphila YIT 11841 isolate Paraprevotella xylaniphila 82A6]
ATGGCAAAGGATAAGACCGTCTATGTGTGTGCGAATTGCGGACAGGAATCACCGAAGTGGGTGGGGCGTTGTCCTGCGTG
CGGGGAATGGAATACTTTTAAGGAATTCACAGTGCGTAAGGAGAGTGTGTCGGCCATCGCGTCAGGAGGATTTCACCAGG
CGTTGCCGGGGGAACCGTTGCGTAGGCGGCCCATTCCCGTGGGACAGATTGTGACCGACGAGGAACCACGGTTGGACATG
CACGACGAGGAACTGAACCGCGTGTTGGGCGGCGGACTGGTGCCCGGCTCATTGGTGCTCTTGGGTGGGGAACCCGGTAT
CGGGAAGTCCACTTTGGTCTTGCAGACCGTACTGAAGATGACGGACAAGCGTGTGCTTTATGTCAGCGGCGAGGAGAGTG
CGCGGCAGTTGAAGTTGCGTGCCGACCGTTTGGTGCCAAGGGCAGGAGGAAAGGCGGACGGACAGGAAGGGTTCTTGTCC
CGTTCGTCTTGCATGGTCGTGTGCGAGACTTCGCTCGATCAGATTTTCCTGCACGTCCGTAACGAGCAGCCGCAGTTGGT
GGTCATAGATTCCATACAGACCATCATGACCGAGGCCGTGGACAGTTCGCCCGGCAGTATCTCGCAAGTACGCGAGTGCG
CTGCGCTGTTGTTGAAATTCGCCAAGGAGAGCAACATTCCCGTGATATTGATCGGCCATATCAATAAGGAGGGGACACTG
GCCGGCCCCAAGGTGTTGGAACATATCGTGGATGCCGTGTTGCAGTTCGAGGGCGACCAACATTATATGTACCGCATCCT
GCGCAGTATCAAGAACCGTTTCGGCAGTACGGCCGAGTTGGGCATCTACGAGATGCGGCAGGACGGTTTGCGGCAGGTGA
GCAATCCTTCGGAACTGTTGCTCACCGAGAATCACGAAGGGCTGAGCGGCGTGGCCATCTCTTCGGCCATCGAAGGCGTG
CGCCCCTTCCTCATCGAGACGCAGGCACTGGTCAGCACGGCAGCCTACGGCACGCCGCAACGTTCGGCCACCGGCTTCGA
CCTGCGCCGGTTGAATATGTTGTTGGCCGTGTTGGAGAAGCGGGTTGGGTTCAAGCTGGCGCAGAAAGACGTGTTCCTGA
ACATAGCCGGAGGGTTGAAAGTGACCGATCCGGCCATCGACTTGTCCGTCATTTCCGCCGTGTTGAGCAGCAATGTGGAC
ACAGGCATCGAAAGCGGTGTCTGCATGGCCGGGGAAGTCGGCTTGAGCGGCGAGATACGTCCGGTGAACCGTATCGAGCA
ACGTGTGGCGGAAGCTGCCAAGCTCGGTTTCCGGCGAATGATTGTTCCGCGTCACAACTTGCAGGGATTCGACACGTCGA
AACTGAAGATAGAACTTGTCCCAGTGCGGAAAGTGGAAGAGGCGCTCCGTGCGCTTTTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-238)

Subunit ChlI of Mg-chelatase (ChlI)

(360-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.37

100

0.496
  radA Streptococcus mitis SK321

47.158

100

0.473
  radA Streptococcus mitis NCTC 12261

47.257

100

0.473
  radA Streptococcus pneumoniae Rx1

47.257

100

0.473
  radA Streptococcus pneumoniae D39

47.257

100

0.473
  radA Streptococcus pneumoniae R6

47.257

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.257

100

0.473

Multiple sequence alignment