Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | PMYSY11_RS18565 | Genome accession | NZ_LR215729 |
| Coordinates | 4029883..4030428 (+) | Length | 181 a.a. |
| NCBI ID | WP_150547689.1 | Uniprot ID | A0A653DZZ0 |
| Organism | Pseudomonas marincola strain YSy11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4024883..4035428
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMYSY11_RS18555 (PMYSY11_3827) | - | 4028756..4029166 (+) | 411 | WP_172970635.1 | type IV pilin protein | - |
| PMYSY11_RS22000 (PMYSY11_3828) | - | 4029429..4029881 (+) | 453 | WP_150547688.1 | GspH/FimT family pseudopilin | - |
| PMYSY11_RS18565 (PMYSY11_3829) | pilV | 4029883..4030428 (+) | 546 | WP_150547689.1 | type IV pilus modification protein PilV | Machinery gene |
| PMYSY11_RS18570 (PMYSY11_3830) | - | 4030437..4031216 (+) | 780 | WP_150547690.1 | PilW family protein | - |
| PMYSY11_RS18575 (PMYSY11_3831) | - | 4031213..4031773 (+) | 561 | WP_239655503.1 | pilus assembly PilX family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 19567.47 Da Isoelectric Point: 4.9762
>NTDB_id=1125937 PMYSY11_RS18565 WP_150547689.1 4029883..4030428(+) (pilV) [Pseudomonas marincola strain YSy11]
MISRVRNRGFSMIEVLVTLVLISIGVLGMVAMQAKGITYTQDSVVRNQAALLADELMEILRSDRQTILDVKGVPTSTSDY
YKKKGTAFPDAPASCNPLPASAEDRLGCWAAKAAQTLPDAGALLTSDFYVCRTDGSAVCPDKGAAIEIQLAWRVKENECM
DANAQAGDDLTICHYHLRAEL
MISRVRNRGFSMIEVLVTLVLISIGVLGMVAMQAKGITYTQDSVVRNQAALLADELMEILRSDRQTILDVKGVPTSTSDY
YKKKGTAFPDAPASCNPLPASAEDRLGCWAAKAAQTLPDAGALLTSDFYVCRTDGSAVCPDKGAAIEIQLAWRVKENECM
DANAQAGDDLTICHYHLRAEL
Nucleotide
Download Length: 546 bp
>NTDB_id=1125937 PMYSY11_RS18565 WP_150547689.1 4029883..4030428(+) (pilV) [Pseudomonas marincola strain YSy11]
ATGATTTCACGCGTGCGCAATCGCGGTTTCAGCATGATCGAGGTATTAGTCACCCTGGTGCTCATCAGCATTGGCGTGCT
TGGCATGGTCGCCATGCAAGCCAAAGGGATCACCTACACCCAAGACTCCGTAGTCCGTAATCAGGCGGCGCTGCTCGCCG
ATGAGCTGATGGAAATCCTGCGCAGCGACCGGCAGACCATCCTCGATGTGAAGGGTGTTCCTACCAGCACTTCAGACTAT
TACAAGAAAAAAGGTACGGCGTTCCCGGATGCACCGGCCAGTTGCAACCCGCTGCCAGCGTCGGCTGAAGATCGCCTCGG
CTGCTGGGCGGCAAAAGCAGCGCAGACCTTGCCGGATGCGGGCGCCCTGCTCACCAGCGACTTCTATGTTTGCCGCACAG
ATGGTTCGGCAGTTTGCCCTGACAAAGGCGCCGCCATCGAGATTCAGCTCGCCTGGCGGGTCAAGGAAAACGAATGTATG
GACGCCAACGCTCAAGCGGGCGATGACCTGACTATTTGCCACTATCACCTGCGCGCCGAGCTTTAG
ATGATTTCACGCGTGCGCAATCGCGGTTTCAGCATGATCGAGGTATTAGTCACCCTGGTGCTCATCAGCATTGGCGTGCT
TGGCATGGTCGCCATGCAAGCCAAAGGGATCACCTACACCCAAGACTCCGTAGTCCGTAATCAGGCGGCGCTGCTCGCCG
ATGAGCTGATGGAAATCCTGCGCAGCGACCGGCAGACCATCCTCGATGTGAAGGGTGTTCCTACCAGCACTTCAGACTAT
TACAAGAAAAAAGGTACGGCGTTCCCGGATGCACCGGCCAGTTGCAACCCGCTGCCAGCGTCGGCTGAAGATCGCCTCGG
CTGCTGGGCGGCAAAAGCAGCGCAGACCTTGCCGGATGCGGGCGCCCTGCTCACCAGCGACTTCTATGTTTGCCGCACAG
ATGGTTCGGCAGTTTGCCCTGACAAAGGCGCCGCCATCGAGATTCAGCTCGCCTGGCGGGTCAAGGAAAACGAATGTATG
GACGCCAACGCTCAAGCGGGCGATGACCTGACTATTTGCCACTATCACCTGCGCGCCGAGCTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Pseudomonas aeruginosa PAK |
51.351 |
100 |
0.525 |