Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PMYSY11_RS13400 Genome accession   NZ_LR215729
Coordinates   2875791..2876423 (-) Length   210 a.a.
NCBI ID   WP_069898798.1    Uniprot ID   -
Organism   Pseudomonas marincola strain YSy11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2870791..2881423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMYSY11_RS13365 - 2871455..2871559 (-) 105 Protein_2636 GntR family transcriptional regulator -
  PMYSY11_RS13370 (PMYSY11_2760) murB 2871835..2872854 (-) 1020 WP_150549479.1 UDP-N-acetylmuramate dehydrogenase -
  PMYSY11_RS13375 (PMYSY11_2761) - 2872851..2873315 (-) 465 WP_150549480.1 low molecular weight protein-tyrosine-phosphatase -
  PMYSY11_RS13380 (PMYSY11_2762) kdsB 2873315..2874079 (-) 765 WP_150549481.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMYSY11_RS13385 (PMYSY11_2763) - 2874080..2874265 (-) 186 WP_069898793.1 Trm112 family protein -
  PMYSY11_RS13390 (PMYSY11_2764) lpxK 2874317..2875330 (-) 1014 WP_150549482.1 tetraacyldisaccharide 4'-kinase -
  PMYSY11_RS13395 (PMYSY11_2765) - 2875366..2875794 (-) 429 WP_150549483.1 ExbD/TolR family protein -
  PMYSY11_RS13400 (PMYSY11_2766) exbB 2875791..2876423 (-) 633 WP_069898798.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMYSY11_RS13405 (PMYSY11_2768) comA 2876496..2878706 (-) 2211 WP_150549721.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMYSY11_RS13410 (PMYSY11_2769) - 2878949..2879476 (+) 528 WP_069898800.1 DUF2062 domain-containing protein -
  PMYSY11_RS13415 (PMYSY11_2770) - 2879629..2880873 (-) 1245 WP_090508544.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22617.90 Da        Isoelectric Point: 9.1073

>NTDB_id=1125927 PMYSY11_RS13400 WP_069898798.1 2875791..2876423(-) (exbB) [Pseudomonas marincola strain YSy11]
MWELVKAGGWMMLPIILCSIAAAAIIAERLWTLRPSRVKPGNLLATVWGWIKAKKLNAQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIQIFSSFMDSGMANAPLLAGGIAKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDRDVEIGGDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1125927 PMYSY11_RS13400 WP_069898798.1 2875791..2876423(-) (exbB) [Pseudomonas marincola strain YSy11]
GTGTGGGAACTGGTTAAAGCGGGCGGCTGGATGATGCTGCCAATCATACTGTGTTCAATTGCGGCGGCTGCGATCATTGC
CGAGCGGCTGTGGACCTTGCGCCCGAGTCGCGTCAAGCCTGGCAACTTGCTGGCCACCGTTTGGGGCTGGATCAAGGCCA
AGAAACTCAACGCGCAAAAGCTCAAGGAGCTGCGCGCCAACTCGCCGTTGGGTGAAATTCTCGCCGCGGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCGGCCGCGCGCGTCGTCCACGATCTTGAGCGCTATCT
CAACGCGCTGGGCACCATTGCCGGCATCGCCCCGCTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCCAGATTTTCT
CCTCGTTCATGGATTCAGGCATGGCCAACGCGCCATTGCTCGCCGGCGGTATCGCCAAGGCGCTGATTACCACGGCAGCG
GGCTTGATGGTCGCGATCCCGGCTCTGTTCTTCCACCGTTACCTGCAGCGTCGGGTTGATGAGTTGGTGGTTGGCATGGA
GCAGGAAGCAATCAAGCTGGTTGAAGTGGTGCAGGGGGATCGTGACGTAGAGATAGGCGGGGACAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.143

100

0.871

Multiple sequence alignment