Detailed information NTG1125928

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PMYSY11_RS13405
• Genome accession: NZ_LR215729
• Coordinates: 2876496..2878706 (-)
• Length: 736 a.a.
• NCBI ID: WP_150549721.1
• Uniprot ID: -
• Organism: Pseudomonas marincola strain YSy11
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2871496..2883706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMYSY11_RS13370 (PMYSY11_2760)	murB	2871835..2872854 (-)	1020	WP_150549479.1	UDP-N-acetylmuramate dehydrogenase	-
PMYSY11_RS13375 (PMYSY11_2761)	-	2872851..2873315 (-)	465	WP_150549480.1	low molecular weight protein-tyrosine-phosphatase	-
PMYSY11_RS13380 (PMYSY11_2762)	kdsB	2873315..2874079 (-)	765	WP_150549481.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PMYSY11_RS13385 (PMYSY11_2763)	-	2874080..2874265 (-)	186	WP_069898793.1	Trm112 family protein	-
PMYSY11_RS13390 (PMYSY11_2764)	lpxK	2874317..2875330 (-)	1014	WP_150549482.1	tetraacyldisaccharide 4'-kinase	-
PMYSY11_RS13395 (PMYSY11_2765)	-	2875366..2875794 (-)	429	WP_150549483.1	ExbD/TolR family protein	-
PMYSY11_RS13400 (PMYSY11_2766)	exbB	2875791..2876423 (-)	633	WP_069898798.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PMYSY11_RS13405 (PMYSY11_2768)	comA	2876496..2878706 (-)	2211	WP_150549721.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PMYSY11_RS13410 (PMYSY11_2769)	-	2878949..2879476 (+)	528	WP_069898800.1	DUF2062 domain-containing protein	-
PMYSY11_RS13415 (PMYSY11_2770)	-	2879629..2880873 (-)	1245	WP_090508544.1	lipoprotein-releasing ABC transporter permease subunit	-
PMYSY11_RS13420 (PMYSY11_2771)	lolD	2880873..2881556 (-)	684	WP_090509164.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PMYSY11_RS13425 (PMYSY11_2772)	-	2881579..2882829 (-)	1251	WP_150549484.1	lipoprotein-releasing ABC transporter permease subunit	-
PMYSY11_RS13430 (PMYSY11_2773)	-	2882925..2883506 (+)	582	WP_090508545.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79295.36 Da
• Isoelectric Point: 9.8172

>NTDB_id=1125928 PMYSY11_RS13405 WP_150549721.1 2876496..2878706(-) (comA) [Pseudomonas marincola strain YSy11]
MIALVLGLLSLRLLPVLPPPWLLGLLVLLAVGLVFTRINSIGWFVLGLAWACASAQLALDDRLAPELDGRTLWLQGQVVG
LAQQDDGVVRFELAHPVSRRALLPQKIRLSWYGQHSVVAGEAWRLAVRLKRPHGLVNPQVFDYETWLLAQRIGATGSVKD
GQRIAPASGLGSWRDRLRKRLLATPANGREAMLAALVVGNGSAIAPADWATLKATGTVHLLVISGTHIGLLAGLLYALVA
GLARIGWWPQAIPWLPCACALALCGALVYGFLAGFQVPVQRACAMVGLVLLWRLRFRRIGASYVLLFALIVVLLIEPLAS
LQAGFWLSFSAVALLMLIFSGRLGGWSWGQSLVRAQWAIALGLLPMMLALGLPVSLSGPLANLVAVPLVGLVIVPLALAG
SLLLPVPYVGAGLLWLAGGLVEILFRGLTPLAHWLPAWQPGAYGLGVWLLACAGTLLLLLPSGLPLRLFGWPLMLPLLFT
EPQKIAEGTAVVTMLDVGQGLAVVVRTRNHALLYDAAPRFGDFDLGERVVLPSLRALNIEQLDLLLLSHGDNDHIGGASA
VIDGMPVEHVISGEAGRLPSRWRAQPCRQRSWQWDGVTLQSWRWADASDANQASCVLIIEAQGERIVLTGDIDVAAESAL
LASGLELEARWLLSAHHGSRSSSSRAFVQRVAPQAVLISRGKHNAFGHPAADVLARYAQIPARVYDTVEQGAVTVQLGQF
TDAKTLRTESRFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=1125928 PMYSY11_RS13405 WP_150549721.1 2876496..2878706(-) (comA) [Pseudomonas marincola strain YSy11]
ATGATAGCGCTTGTGCTCGGCTTATTGTCATTACGTTTATTGCCCGTGCTGCCGCCACCGTGGCTGCTTGGCCTGCTCGT
GTTGCTGGCTGTCGGTTTGGTGTTCACCCGGATTAACAGCATTGGCTGGTTCGTGCTGGGGCTGGCATGGGCGTGCGCCA
GTGCACAGCTGGCGCTGGATGACCGCCTGGCCCCTGAGCTGGATGGTCGCACGCTCTGGTTGCAAGGGCAGGTGGTGGGG
CTGGCGCAGCAGGATGATGGCGTTGTGCGTTTTGAACTCGCACACCCGGTTTCGCGCCGGGCGTTATTGCCGCAAAAAAT
ACGCCTCTCCTGGTACGGCCAGCATTCGGTGGTTGCGGGTGAAGCCTGGCGTTTAGCTGTGCGCTTGAAGCGCCCGCATG
GCTTGGTCAATCCGCAGGTGTTCGATTATGAAACCTGGTTGCTGGCGCAGCGCATCGGCGCAACCGGTTCGGTCAAGGAC
GGCCAGCGTATTGCCCCGGCGAGTGGTTTGGGCAGTTGGCGCGACAGGTTACGCAAGCGGCTGTTGGCGACTCCGGCAAA
CGGGCGGGAGGCGATGCTGGCGGCGCTTGTGGTGGGCAATGGCTCAGCAATCGCGCCTGCTGACTGGGCCACTCTCAAGG
CCACTGGCACTGTGCATTTGTTGGTGATATCCGGCACGCATATCGGCTTGTTGGCGGGGCTGTTGTATGCGCTGGTCGCG
GGGCTTGCGCGGATCGGCTGGTGGCCACAAGCTATTCCCTGGCTGCCATGCGCCTGTGCGTTAGCGCTGTGCGGCGCATT
GGTCTACGGGTTTTTGGCCGGGTTTCAGGTGCCGGTGCAGCGTGCTTGTGCGATGGTCGGGTTGGTGCTGCTTTGGCGCT
TGCGATTTCGTCGGATTGGCGCCTCCTACGTGTTGCTGTTTGCCTTGATCGTGGTGCTGCTCATTGAGCCGCTGGCGAGT
TTGCAGGCAGGCTTCTGGTTGTCCTTTTCAGCGGTGGCGCTGCTCATGTTGATTTTCAGTGGGCGACTCGGCGGTTGGTC
GTGGGGGCAGTCGCTGGTGCGCGCGCAGTGGGCGATTGCCCTGGGGTTGCTGCCGATGATGTTGGCATTGGGACTGCCCG
TGAGTCTGAGTGGCCCGCTGGCGAATCTTGTCGCGGTGCCATTGGTGGGGTTGGTCATCGTGCCGTTGGCACTGGCGGGC
AGCCTGTTGTTGCCGGTGCCTTATGTGGGCGCAGGGCTTTTATGGTTGGCCGGCGGCTTGGTCGAGATACTGTTTCGCGG
GCTCACACCGCTAGCGCACTGGCTACCCGCATGGCAGCCGGGTGCTTATGGTCTGGGCGTGTGGTTGCTGGCTTGTGCGG
GCACGTTGTTGCTGTTGCTGCCTTCGGGATTACCGCTGCGCTTGTTTGGCTGGCCGCTGATGCTACCGTTGCTGTTTACC
GAGCCGCAGAAAATCGCAGAGGGTACGGCTGTCGTGACGATGCTCGATGTAGGTCAGGGTCTCGCCGTGGTGGTGCGCAC
GCGCAACCATGCATTGTTGTATGACGCGGCGCCCCGCTTTGGCGACTTTGATTTGGGTGAGCGCGTGGTGCTTCCTTCGC
TGCGCGCGCTGAATATTGAACAGCTCGACCTTCTGCTGTTGAGTCATGGCGATAATGATCATATAGGCGGCGCCTCGGCG
GTAATCGATGGCATGCCGGTCGAACATGTCATCAGTGGTGAGGCCGGCCGGTTACCGTCACGCTGGCGGGCCCAGCCATG
CCGGCAACGCTCGTGGCAGTGGGATGGCGTGACCCTGCAAAGTTGGCGCTGGGCAGATGCCAGTGATGCGAATCAGGCGT
CATGCGTGCTGATCATTGAAGCGCAGGGCGAGCGGATCGTGCTGACCGGCGATATCGATGTGGCGGCCGAAAGCGCGTTG
CTGGCCAGTGGGCTGGAACTTGAGGCGCGCTGGCTGCTGTCGGCGCATCATGGCAGTCGTTCGTCGTCTTCTCGCGCATT
TGTTCAGCGGGTTGCCCCGCAAGCGGTGCTAATCTCGCGGGGCAAGCACAATGCTTTTGGTCACCCGGCCGCGGATGTAT
TGGCGCGCTATGCGCAAATTCCGGCGCGCGTGTACGACACTGTGGAGCAGGGCGCAGTGACCGTTCAGCTTGGTCAGTTC
ACAGACGCTAAAACATTGCGGACAGAATCTCGCTTTTGGCGAGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-459)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.58	97.147	0.579
comA	Ralstonia pseudosolanacearum GMI1000	34.531	100	0.365