Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EXC62_RS06755 Genome accession   NZ_LR215048
Coordinates   1427755..1429518 (-) Length   587 a.a.
NCBI ID   WP_035375522.1    Uniprot ID   -
Organism   Haploplasma axanthum strain NCTC10138     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422755..1434518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXC62_RS06735 (NCTC10138_01371) accD 1423081..1423941 (-) 861 WP_026389906.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  EXC62_RS06740 (NCTC10138_01372) accC 1423922..1425298 (-) 1377 WP_162140090.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  EXC62_RS06745 (NCTC10138_01373) - 1425288..1425764 (-) 477 WP_052589607.1 biotin/lipoyl-containing protein -
  EXC62_RS06750 (NCTC10138_01374) rcrQ 1425950..1427758 (-) 1809 WP_035375503.1 ABC transporter ATP-binding protein Regulator
  EXC62_RS06755 (NCTC10138_01375) rcrP 1427755..1429518 (-) 1764 WP_035375522.1 ABC transporter ATP-binding protein Regulator
  EXC62_RS06760 (NCTC10138_01376) - 1429511..1429951 (-) 441 WP_052589611.1 MarR family winged helix-turn-helix transcriptional regulator -
  EXC62_RS06765 (NCTC10138_01377) - 1430099..1430827 (-) 729 WP_162140075.1 hypothetical protein -
  EXC62_RS06770 (NCTC10138_01378) - 1430891..1431331 (-) 441 WP_026389911.1 N-acetyltransferase -
  EXC62_RS06775 (NCTC10138_01379) ahpC 1431461..1432024 (-) 564 WP_026389912.1 alkyl hydroperoxide reductase subunit C -
  EXC62_RS06780 (NCTC10138_01380) - 1432103..1433830 (-) 1728 WP_026389913.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  EXC62_RS06785 (NCTC10138_01381) - 1433903..1434310 (-) 408 WP_162140076.1 GtrA family protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65722.31 Da        Isoelectric Point: 9.2224

>NTDB_id=1125904 EXC62_RS06755 WP_035375522.1 1427755..1429518(-) (rcrP) [Haploplasma axanthum strain NCTC10138]
MLRLLKYLKIEQWIMILASVGLIVLQVWLDLKLPEYMEQVTKQLQTPNPVLKEIWINGGYMLLCALGSLLAAFIVGFMMA
RIAATFSQTLRISMFKKIDSFTKNDINNFSTASLITRTTNDVSQVQMFITMGMQLLIKAPILAIWAITKITVKGTEWSIA
TGTVIGLLLILVLVVMFFVVPKFKKVQKMVDQLTVVTRENLQGVRVIRAYNAEEYQEEKFRKANDELTNINLFTSRSMSM
LNPLINMLMSFLSLSIYVIGAYLIDKNHGNLLLQTELFGSMIVFIQYAMQVVMAFMMLVMIFIILPRTLVSGKRINEVLL
TKPSIKDGAGVSDDNGVKGTVEFKNVSFKYPGAEEYVIKDVSFKVNQGETIAFIGSTGSGKSTLINLIPRFYDATEGEIL
IDDVDIKKYRLGELHDKIGYVPQKAVLFKGTIKFNVAYGESSYKDITDDDVWKALEIAQGKDFVEELPEKLDAPVAQGGT
NLSGGQKQRLAIARAIAREPEILIFDDSFSALDYKTDRKLRTTLRKETKGVTSMIVAQRIGTIMDANKIVVLNEGKVAGI
GTHHELLKTSSVYKEIALSQLSEEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1125904 EXC62_RS06755 WP_035375522.1 1427755..1429518(-) (rcrP) [Haploplasma axanthum strain NCTC10138]
ATGCTTAGATTATTAAAGTATTTAAAAATTGAACAATGGATAATGATACTTGCAAGTGTCGGTTTAATTGTATTACAAGT
TTGGCTTGATTTAAAATTACCTGAATATATGGAGCAAGTTACTAAACAGTTACAAACTCCAAACCCAGTCTTAAAAGAGA
TATGGATTAATGGTGGGTATATGTTATTATGTGCACTTGGAAGCCTATTAGCCGCATTTATTGTAGGTTTTATGATGGCA
AGAATTGCAGCAACTTTCTCACAAACATTAAGAATATCAATGTTTAAAAAAATTGACTCATTTACTAAAAATGATATTAA
CAATTTTTCTACTGCTAGTTTAATAACTAGAACGACAAATGATGTTAGTCAAGTTCAAATGTTTATTACTATGGGAATGC
AGTTACTAATTAAGGCACCAATTTTAGCGATATGGGCTATAACAAAAATCACTGTTAAAGGAACTGAATGGTCGATTGCT
ACAGGAACAGTTATTGGATTGCTACTAATATTAGTCTTAGTTGTTATGTTCTTTGTGGTACCTAAATTTAAAAAAGTTCA
AAAAATGGTGGATCAATTAACTGTAGTTACAAGAGAAAACCTACAAGGTGTACGTGTGATTAGAGCATATAATGCTGAGG
AATATCAAGAAGAAAAGTTTAGAAAGGCAAATGATGAATTAACTAACATCAATCTATTTACAAGTAGAAGTATGTCTATG
TTAAATCCGCTTATCAATATGTTAATGAGTTTCTTATCATTATCAATCTATGTTATAGGAGCTTATTTAATTGATAAAAA
TCATGGTAATTTATTACTACAAACAGAATTATTTGGATCTATGATTGTATTCATTCAATATGCAATGCAAGTTGTTATGG
CATTTATGATGTTAGTAATGATATTTATTATTTTACCAAGAACACTTGTTTCAGGAAAAAGAATCAATGAAGTATTACTT
ACTAAACCATCAATTAAAGATGGAGCGGGAGTTTCAGATGATAATGGTGTTAAAGGAACTGTAGAGTTTAAAAATGTAAG
TTTTAAATATCCTGGTGCTGAAGAATATGTTATTAAAGATGTTAGTTTTAAAGTTAATCAAGGAGAAACGATTGCTTTTA
TCGGATCAACTGGTAGTGGAAAATCAACATTAATTAATCTTATACCAAGATTTTATGATGCAACTGAAGGTGAAATTTTA
ATTGATGATGTAGATATCAAAAAATACCGTTTAGGTGAATTACACGATAAAATCGGATATGTACCTCAAAAAGCTGTTTT
ATTTAAAGGAACAATTAAATTTAATGTTGCATATGGAGAAAGTTCATATAAAGATATAACAGATGATGATGTTTGGAAAG
CATTAGAGATTGCTCAAGGAAAAGATTTTGTTGAAGAATTACCTGAAAAACTAGATGCTCCTGTTGCACAAGGAGGAACA
AATTTATCTGGTGGTCAAAAACAAAGACTTGCAATCGCAAGAGCAATCGCAAGAGAGCCGGAAATCTTAATTTTCGATGA
TTCATTTAGCGCACTTGACTATAAAACAGATAGAAAATTACGTACAACTTTGAGAAAAGAAACAAAAGGTGTTACAAGTA
TGATTGTTGCTCAAAGAATAGGAACAATTATGGATGCAAATAAAATTGTTGTTTTAAATGAAGGTAAGGTTGCTGGCATT
GGAACGCATCATGAACTTTTAAAAACAAGTTCTGTATATAAAGAAATTGCCTTATCGCAATTAAGTGAGGAGGAATTGGC
ATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-295)

ABC transporter (ABC_tran)

(359-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.349

100

0.532

Multiple sequence alignment