Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EXC62_RS06750 Genome accession   NZ_LR215048
Coordinates   1425950..1427758 (-) Length   602 a.a.
NCBI ID   WP_035375503.1    Uniprot ID   -
Organism   Haploplasma axanthum strain NCTC10138     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420950..1432758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXC62_RS06725 (NCTC10138_01369) - 1421333..1422262 (-) 930 WP_162140074.1 DUF561 domain-containing protein -
  EXC62_RS06730 (NCTC10138_01370) - 1422249..1423079 (-) 831 WP_035375501.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  EXC62_RS06735 (NCTC10138_01371) accD 1423081..1423941 (-) 861 WP_026389906.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  EXC62_RS06740 (NCTC10138_01372) accC 1423922..1425298 (-) 1377 WP_162140090.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  EXC62_RS06745 (NCTC10138_01373) - 1425288..1425764 (-) 477 WP_052589607.1 biotin/lipoyl-containing protein -
  EXC62_RS06750 (NCTC10138_01374) rcrQ 1425950..1427758 (-) 1809 WP_035375503.1 ABC transporter ATP-binding protein Regulator
  EXC62_RS06755 (NCTC10138_01375) rcrP 1427755..1429518 (-) 1764 WP_035375522.1 ABC transporter ATP-binding protein Regulator
  EXC62_RS06760 (NCTC10138_01376) - 1429511..1429951 (-) 441 WP_052589611.1 MarR family winged helix-turn-helix transcriptional regulator -
  EXC62_RS06765 (NCTC10138_01377) - 1430099..1430827 (-) 729 WP_162140075.1 hypothetical protein -
  EXC62_RS06770 (NCTC10138_01378) - 1430891..1431331 (-) 441 WP_026389911.1 N-acetyltransferase -
  EXC62_RS06775 (NCTC10138_01379) ahpC 1431461..1432024 (-) 564 WP_026389912.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67420.26 Da        Isoelectric Point: 7.8849

>NTDB_id=1125903 EXC62_RS06750 WP_035375503.1 1425950..1427758(-) (rcrQ) [Haploplasma axanthum strain NCTC10138]
MKRNQKMKKEKPTNLKDSWVKLLKFSRKYNLFIIIAILAVIGATVIQVASPKILQQLVTEIAVIAKLDTTTGLPLFTRID
MDRVKQITITLVTLFVIAMLLNATQSFIMSTVTRRVENDMRKKLAEKINKIPLKYFDSTNSGDTISRVINDVDTIGQTMN
QSISSTISAIILFLGSILMMFITNWILAFAAIGSSIIGFLLVGFIMSKSQKHFIAQQMQIGELNGFVEEIYTNHSVVKSY
NASKKSIKDFRVINDKLYNSAWKSQFFSGLMMPLFSFIGNLGYVAVSIIGAVLVANTIIEFSVIIAFMSYVGFFTNSLGS
MAQGINSFQLTAAASERVFQFLEQEELENEDYKQEKISDTKGIVEFKNVKFGYNPEKVIINDFSAKINAGEKVAIVGPTG
AGKTTIVNLLMRFYEINEGSIKIDGINTNDVTRENVHDQFCMVLQDTWIFEGTVYDNIIYSQENVTKEDVVKACKTLGLD
HFIRTLSDGYETILTDKSSLSEGQKQLITIARAMIKNSPLLILDEATSSVDTRTEALIQKAMDELMKGRTSFVIAHRLST
IKNADLILVMKNGDIIESGNHDKLLSENGFYAELYNSQFQLD

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1125903 EXC62_RS06750 WP_035375503.1 1425950..1427758(-) (rcrQ) [Haploplasma axanthum strain NCTC10138]
ATGAAAAGAAATCAAAAGATGAAAAAAGAAAAGCCAACTAATCTTAAAGATTCATGGGTAAAATTATTAAAGTTTTCTAG
AAAATATAATCTGTTTATAATAATAGCAATTTTAGCTGTTATTGGTGCAACAGTTATTCAAGTTGCTAGTCCAAAAATAT
TACAACAACTTGTTACCGAGATAGCTGTTATAGCGAAACTTGATACTACAACGGGTCTACCATTATTTACAAGAATAGAT
ATGGACCGAGTTAAGCAGATAACAATCACTTTGGTTACTTTATTTGTAATCGCTATGTTATTAAATGCTACACAAAGTTT
TATTATGTCAACTGTCACTAGAAGAGTTGAAAATGATATGAGAAAAAAATTAGCTGAAAAGATTAATAAGATTCCATTGA
AATATTTTGACTCAACAAATAGCGGTGATACAATAAGTAGAGTTATTAATGACGTTGATACAATTGGTCAAACAATGAAT
CAAAGTATTTCAAGTACTATTTCGGCAATTATATTATTCTTAGGATCAATATTAATGATGTTTATTACTAATTGGATTTT
AGCTTTTGCTGCAATTGGTTCTAGTATAATAGGATTCTTATTAGTAGGATTTATTATGTCAAAGTCACAAAAACATTTTA
TTGCACAACAAATGCAAATTGGGGAATTAAATGGTTTTGTTGAAGAAATATACACTAATCACAGTGTAGTAAAATCATAT
AATGCAAGTAAAAAATCAATAAAGGACTTTAGAGTGATTAATGACAAACTTTATAATAGTGCATGGAAGTCACAATTCTT
TTCTGGATTAATGATGCCTTTATTCTCATTTATTGGTAATTTAGGTTATGTTGCAGTTTCAATTATTGGTGCTGTACTTG
TAGCTAATACAATTATTGAATTTTCAGTTATTATTGCATTTATGTCATATGTTGGATTCTTTACTAACTCATTAGGATCA
ATGGCACAAGGTATTAATAGTTTCCAACTAACCGCTGCTGCAAGTGAGAGAGTATTCCAATTTCTAGAACAAGAAGAACT
TGAAAATGAAGATTATAAACAAGAAAAAATTAGTGATACAAAAGGAATAGTCGAATTTAAAAATGTTAAATTCGGATATA
ATCCTGAAAAAGTAATTATTAATGATTTCAGTGCGAAAATTAATGCTGGTGAAAAAGTTGCTATTGTTGGACCTACAGGA
GCAGGAAAAACAACTATTGTTAATCTATTAATGAGATTCTATGAAATAAATGAAGGAAGTATCAAAATAGATGGCATTAA
TACAAATGATGTTACTAGAGAAAATGTTCATGACCAATTTTGTATGGTTTTACAAGATACTTGGATTTTTGAAGGAACAG
TTTATGATAATATAATTTATAGTCAAGAAAATGTGACTAAAGAAGATGTTGTTAAAGCTTGTAAAACTTTAGGACTTGAT
CATTTTATTAGAACTTTATCAGATGGATATGAAACTATTTTAACTGATAAATCAAGTTTATCTGAAGGACAAAAACAATT
AATAACAATCGCACGTGCAATGATTAAAAACTCGCCATTATTAATTCTTGATGAAGCAACATCAAGTGTTGATACTAGAA
CTGAAGCATTAATTCAAAAAGCAATGGATGAATTGATGAAAGGTAGAACAAGTTTTGTAATTGCACATAGATTATCAACA
ATTAAAAATGCTGATTTAATTCTTGTTATGAAAAATGGCGATATTATTGAATCTGGAAATCACGATAAACTTCTAAGTGA
AAATGGATTCTATGCTGAATTATATAATAGTCAATTTCAATTAGACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-528)

ABC transporter transmembrane region (ABC_membrane)

(33-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.404

96.179

0.523

Multiple sequence alignment