Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CJ8421_RS07260 Genome accession   NZ_CP005388
Coordinates   1394791..1396350 (-) Length   519 a.a.
NCBI ID   WP_032592319.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389791..1401350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS07235 (CJ8421_07340) - 1389801..1390235 (+) 435 WP_002779263.1 flagellar protein FlgN -
  CJ8421_RS07240 (CJ8421_07345) flgK 1390245..1392071 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  CJ8421_RS07245 (CJ8421_07350) - 1392088..1392852 (+) 765 WP_002860345.1 TIGR02757 family protein -
  CJ8421_RS07250 (CJ8421_07355) - 1392856..1393620 (+) 765 WP_002860344.1 TSUP family transporter -
  CJ8421_RS07255 (CJ8421_07360) ctsF 1393613..1394794 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  CJ8421_RS07260 (CJ8421_07365) ctsE 1394791..1396350 (-) 1560 WP_032592319.1 GspE/PulE family protein Machinery gene
  CJ8421_RS07265 (CJ8421_07370) ctsX 1396340..1396927 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ8421_RS07270 (CJ8421_07375) ctsP 1396931..1397539 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJ8421_RS07275 (CJ8421_07380) ctsD 1397532..1398944 (-) 1413 WP_002860341.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ8421_RS07280 (CJ8421_07385) ctsR 1398922..1399233 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60122.91 Da        Isoelectric Point: 5.9548

>NTDB_id=112571 CJ8421_RS07260 WP_032592319.1 1394791..1396350(-) (ctsE) [Campylobacter jejuni subsp. jejuni CG8421]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNSHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKYDKEILDLHKLNLGDKNLKILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLSCAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=112571 CJ8421_RS07260 WP_032592319.1 1394791..1396350(-) (ctsE) [Campylobacter jejuni subsp. jejuni CG8421]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTCGCATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAGTTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACGCAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAATATGATAAAGAAATTTTGGATTTGCATAAACTAAATCT
TGGAGATAAAAATTTAAAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTATCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

98.844

100

0.988

Multiple sequence alignment