Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CJ8421_RS07255 Genome accession   NZ_CP005388
Coordinates   1393613..1394794 (-) Length   393 a.a.
NCBI ID   WP_002860343.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388613..1399794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS07225 (CJ8421_07330) - 1389157..1389498 (+) 342 WP_002784057.1 hypothetical protein -
  CJ8421_RS07230 (CJ8421_07335) flgM 1389561..1389758 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJ8421_RS07235 (CJ8421_07340) - 1389801..1390235 (+) 435 WP_002779263.1 flagellar protein FlgN -
  CJ8421_RS07240 (CJ8421_07345) flgK 1390245..1392071 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  CJ8421_RS07245 (CJ8421_07350) - 1392088..1392852 (+) 765 WP_002860345.1 TIGR02757 family protein -
  CJ8421_RS07250 (CJ8421_07355) - 1392856..1393620 (+) 765 WP_002860344.1 TSUP family transporter -
  CJ8421_RS07255 (CJ8421_07360) ctsF 1393613..1394794 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  CJ8421_RS07260 (CJ8421_07365) ctsE 1394791..1396350 (-) 1560 WP_032592319.1 GspE/PulE family protein Machinery gene
  CJ8421_RS07265 (CJ8421_07370) ctsX 1396340..1396927 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ8421_RS07270 (CJ8421_07375) ctsP 1396931..1397539 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJ8421_RS07275 (CJ8421_07380) ctsD 1397532..1398944 (-) 1413 WP_002860341.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ8421_RS07280 (CJ8421_07385) ctsR 1398922..1399233 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45746.29 Da        Isoelectric Point: 9.2580

>NTDB_id=112570 CJ8421_RS07255 WP_002860343.1 1393613..1394794(-) (ctsF) [Campylobacter jejuni subsp. jejuni CG8421]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=112570 CJ8421_RS07255 WP_002860343.1 1393613..1394794(-) (ctsF) [Campylobacter jejuni subsp. jejuni CG8421]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAACTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTACCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977

Multiple sequence alignment