Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL299_RS09785 | Genome accession | NZ_LR134536 |
| Coordinates | 1961385..1961780 (-) | Length | 131 a.a. |
| NCBI ID | WP_001829977.1 | Uniprot ID | A0A4Q9W3V8 |
| Organism | Staphylococcus epidermidis strain NCTC13924 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1956385..1966780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL299_RS09760 (NCTC13924_01938) | thiE | 1957125..1957763 (-) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
| EL299_RS09765 (NCTC13924_01939) | thiM | 1957769..1958557 (-) | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
| EL299_RS09770 (NCTC13924_01940) | thiD | 1958550..1959371 (-) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| EL299_RS09775 (NCTC13924_01941) | tenA | 1959364..1960053 (-) | 690 | WP_001829894.1 | thiaminase II | - |
| EL299_RS09780 (NCTC13924_01943) | - | 1960338..1960997 (-) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| EL299_RS09785 (NCTC13924_01944) | ssb | 1961385..1961780 (-) | 396 | WP_001829977.1 | single-stranded DNA-binding protein | Machinery gene |
| EL299_RS09790 (NCTC13924_01945) | - | 1961971..1962411 (+) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| EL299_RS09795 (NCTC13924_01946) | fabZ | 1962729..1963166 (-) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| EL299_RS09800 (NCTC13924_01947) | murA | 1963200..1964465 (-) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| EL299_RS09805 (NCTC13924_01948) | - | 1964575..1964808 (-) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| EL299_RS09810 (NCTC13924_01949) | - | 1964957..1965361 (-) | 405 | WP_001829924.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15158.08 Da Isoelectric Point: 5.2661
>NTDB_id=1124188 EL299_RS09785 WP_001829977.1 1961385..1961780(-) (ssb) [Staphylococcus epidermidis strain NCTC13924]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1124188 EL299_RS09785 WP_001829977.1 1961385..1961780(-) (ssb) [Staphylococcus epidermidis strain NCTC13924]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |