Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EL283_RS07040 Genome accession   NZ_LR134534
Coordinates   1329221..1330141 (-) Length   306 a.a.
NCBI ID   WP_126419277.1    Uniprot ID   -
Organism   Campylobacter insulaenigrae strain NCTC12928     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324221..1335141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL283_RS07020 (NCTC12928_01443) - 1324614..1325999 (-) 1386 WP_126419275.1 replicative DNA helicase -
  EL283_RS07025 (NCTC12928_01444) - 1326237..1326539 (-) 303 WP_126419276.1 HU family DNA-binding protein -
  EL283_RS07030 (NCTC12928_01445) - 1326653..1327708 (-) 1056 WP_039651423.1 hypothetical protein -
  EL283_RS07035 (NCTC12928_01446) - 1327717..1329220 (-) 1504 Protein_1361 MBOAT family O-acyltransferase -
  EL283_RS07040 (NCTC12928_01448) waaF 1329221..1330141 (-) 921 WP_126419277.1 lipopolysaccharide heptosyltransferase II Regulator
  EL283_RS07045 (NCTC12928_01449) - 1330138..1332036 (-) 1899 WP_126419278.1 motility associated factor glycosyltransferase family protein -
  EL283_RS07050 (NCTC12928_01450) - 1332055..1334001 (-) 1947 WP_126419279.1 motility associated factor glycosyltransferase family protein -
  EL283_RS07055 (NCTC12928_01451) - 1333998..1334762 (-) 765 WP_126419280.1 oxidoreductase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 35014.58 Da        Isoelectric Point: 10.4557

>NTDB_id=1124152 EL283_RS07040 WP_126419277.1 1329221..1330141(-) (waaF) [Campylobacter insulaenigrae strain NCTC12928]
MKIFINLPTWLGDAVMASAAIYAIREKFKNAEFIFYGSFTSTELFKRLPNSKIIVENKKQRYTQILKLRPQLGFFNLAFS
FRSAFSSKIILNLIKTQKRFYFDKNILKEKHQVLKYLNFIENALEFKASSQKLQLPIQAKKNKKILGINPGAHFGSAKRW
KSEYFYEVAKEFATTHSIIIFGVKSEELICQNIENLFVKNGIKVKNLCGKTSIFTLCKNISMLDILITNDSGPMHIGAVY
GTKTLAIFGPTKFKQTSPWQQNAKIVHLNLPCMPCMKKVCPLKHHACMEDLKPDMVISLVKKLIGD

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1124152 EL283_RS07040 WP_126419277.1 1329221..1330141(-) (waaF) [Campylobacter insulaenigrae strain NCTC12928]
ATGAAAATTTTTATTAATCTTCCTACTTGGCTTGGTGATGCTGTAATGGCTAGTGCTGCTATTTATGCTATAAGAGAAAA
ATTTAAAAATGCTGAATTTATTTTTTATGGTTCTTTTACTAGTACAGAACTTTTTAAACGCTTGCCAAATTCTAAGATTA
TAGTTGAAAACAAAAAGCAAAGATATACGCAAATTTTAAAACTAAGACCCCAATTAGGTTTTTTTAATCTAGCTTTTTCT
TTTCGTTCAGCATTTTCAAGTAAGATCATTTTAAATTTAATTAAAACTCAAAAAAGATTTTATTTTGATAAAAATATTTT
AAAAGAAAAACATCAAGTATTAAAGTATTTAAATTTTATAGAAAATGCTTTAGAATTTAAAGCTAGCTCTCAAAAACTTC
AATTACCTATACAAGCAAAAAAAAATAAAAAAATTTTAGGTATTAATCCTGGAGCCCATTTTGGAAGTGCCAAAAGATGG
AAAAGTGAATATTTTTATGAAGTTGCAAAAGAATTTGCAACAACACATAGCATTATTATTTTTGGTGTAAAAAGCGAAGA
ATTGATTTGTCAAAATATAGAAAATTTGTTTGTAAAAAATGGAATAAAAGTGAAAAATTTATGTGGTAAAACAAGTATTT
TCACTTTATGCAAAAATATTTCTATGCTAGATATACTAATTACAAATGATAGTGGTCCTATGCACATAGGTGCTGTTTAT
GGTACAAAGACGCTAGCTATTTTTGGCCCTACCAAATTTAAACAGACTTCTCCTTGGCAACAAAATGCAAAAATAGTTCA
TTTAAATTTACCTTGTATGCCTTGCATGAAAAAAGTTTGTCCTTTAAAACACCACGCTTGTATGGAGGATTTAAAACCTG
ATATGGTAATAAGTCTTGTGAAAAAATTAATAGGAGATTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(110-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.392

100

0.634

Multiple sequence alignment