Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   EL283_RS05600 Genome accession   NZ_LR134534
Coordinates   1045623..1046276 (+) Length   217 a.a.
NCBI ID   WP_126419088.1    Uniprot ID   -
Organism   Campylobacter insulaenigrae strain NCTC12928     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040623..1051276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL283_RS05575 (NCTC12928_01152) - 1040720..1042243 (-) 1524 WP_126419083.1 inorganic phosphate transporter -
  EL283_RS05580 (NCTC12928_01153) pdxA 1042290..1043390 (-) 1101 WP_126419084.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  EL283_RS05585 (NCTC12928_01154) - 1043387..1044154 (-) 768 WP_126419085.1 pyridoxine 5'-phosphate synthase -
  EL283_RS05590 (NCTC12928_01155) - 1044209..1045186 (+) 978 WP_126419086.1 Ppx/GppA family phosphatase -
  EL283_RS05595 (NCTC12928_01156) - 1045183..1045626 (+) 444 WP_126419087.1 GatB/YqeY domain-containing protein -
  EL283_RS05600 (NCTC12928_01157) CJE1441 1045623..1046276 (+) 654 WP_126419088.1 DNA/RNA non-specific endonuclease Regulator
  EL283_RS05605 (NCTC12928_01158) dnaK 1046298..1048166 (-) 1869 WP_126419089.1 molecular chaperone DnaK -
  EL283_RS05610 (NCTC12928_01159) grpE 1048189..1048698 (-) 510 WP_039650225.1 nucleotide exchange factor GrpE -
  EL283_RS05615 (NCTC12928_01160) - 1048695..1049477 (-) 783 WP_126419090.1 HrcA family transcriptional regulator -
  EL283_RS05620 (NCTC12928_01162) - 1049836..1050465 (-) 630 WP_126419091.1 hypothetical protein -
  EL283_RS05625 (NCTC12928_01163) - 1050462..1050626 (-) 165 WP_232012959.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 26151.07 Da        Isoelectric Point: 9.7266

>NTDB_id=1124145 EL283_RS05600 WP_126419088.1 1045623..1046276(+) (CJE1441) [Campylobacter insulaenigrae strain NCTC12928]
MKKILGLCVLALNSFAYTQYELHPSFDQYFQNCSLLMNKYYYINCYDYDYKGTKAIAYRLTAEILNRQHIKKRPKFTEDT
NIPKKYRTYWEDYIKSGYTRGHVVPNQSMNTTPQAQLSTFLMSNITPQKKDINNEIWNEIEKRERYLAKKNKELEVLNLI
FYEKNPQRIKNNIAIPSFYVKILKAKTYIECYKVPNDDNFARFNRNYFKEDCSKYIK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1124145 EL283_RS05600 WP_126419088.1 1045623..1046276(+) (CJE1441) [Campylobacter insulaenigrae strain NCTC12928]
ATGAAAAAAATATTAGGATTGTGTGTATTAGCATTAAATTCTTTTGCTTATACACAATATGAGCTTCATCCTAGTTTTGA
TCAATATTTTCAAAATTGTTCACTATTGATGAATAAATATTATTATATTAATTGTTATGATTATGATTACAAAGGCACAA
AGGCTATAGCTTATAGGCTAACAGCCGAAATTTTAAATCGACAGCATATTAAAAAACGTCCCAAATTTACAGAAGATACT
AATATACCAAAAAAATATCGGACCTATTGGGAAGATTATATTAAAAGTGGATACACAAGAGGACATGTGGTTCCCAATCA
ATCTATGAATACAACACCCCAAGCTCAACTTAGTACTTTTTTAATGAGTAACATAACTCCTCAAAAAAAAGATATTAATA
ATGAAATTTGGAATGAAATTGAAAAAAGAGAAAGATATCTGGCAAAGAAAAATAAAGAATTAGAGGTTCTAAATTTAATT
TTTTACGAAAAGAATCCTCAGCGTATTAAAAACAATATTGCAATCCCAAGTTTTTACGTAAAAATTTTAAAAGCAAAAAC
ATACATAGAGTGCTATAAAGTACCAAACGATGATAATTTTGCAAGATTTAATAGGAATTATTTTAAGGAAGATTGTTCTA
AGTACATAAAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576
  CJE0566 Campylobacter jejuni RM1221

56.109

100

0.571

Multiple sequence alignment