Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL309_RS08465 Genome accession   NZ_LR134533
Coordinates   1745786..1746589 (+) Length   267 a.a.
NCBI ID   WP_004283291.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC12742     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1740786..1751589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS08450 (NCTC12742_01672) brnQ 1742126..1743463 (-) 1338 WP_004283295.1 branched-chain amino acid transport system II carrier protein -
  EL309_RS08455 (NCTC12742_01673) pgeF 1743813..1744595 (-) 783 WP_372512999.1 peptidoglycan editing factor PgeF -
  EL309_RS08460 (NCTC12742_01674) rluD 1744669..1745787 (-) 1119 WP_004283292.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL309_RS08465 (NCTC12742_01675) comL 1745786..1746589 (+) 804 WP_004283291.1 outer membrane protein assembly factor BamD Machinery gene
  EL309_RS08470 (NCTC12742_01676) - 1746733..1748331 (-) 1599 WP_004283289.1 peptide chain release factor 3 -
  EL309_RS08475 (NCTC12742_01677) - 1748839..1751589 (+) 2751 WP_004283288.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30983.01 Da        Isoelectric Point: 6.8773

>NTDB_id=1124126 EL309_RS08465 WP_004283291.1 1745786..1746589(+) (comL) [Neisseria weaveri strain NCTC12742]
MKKILLVVAVSLVLGGCATDGTVDKDAQITQDWTVDRLYTEAQDELNSGNYTRAIKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRTHPRHPNLDYALYLKGLVLFNEDQSFLSKLASQDWSDRDPKANRDAYHAFDQLIKQYPNS
KYVQDATERMAKLVDALGGNEIAVARYYMKRGAFLAAANRAQKVVQQYQNTRFVEEALAIMELAYIRLDNKQLAEDTHRI
LEKNFPSSPYLTKPWQLDAMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1124126 EL309_RS08465 WP_004283291.1 1745786..1746589(+) (comL) [Neisseria weaveri strain NCTC12742]
ATGAAAAAAATTCTTTTAGTGGTTGCTGTAAGTTTGGTTCTGGGCGGGTGTGCCACAGACGGTACTGTTGATAAAGATGC
CCAGATTACTCAGGATTGGACGGTTGACCGTTTATACACGGAAGCTCAAGACGAGCTTAATAGCGGCAATTATACGCGAG
CTATCAAGTTATATGAAATTTTAGAATCGCGTTTCCCGAACGGACGGTATGCACAGCAATCCCAATTGGATACCGCTTAT
GCCTATTATAAAGATGACGAGCCGGAGAAAGCATTGGCGGCGATTGACCGCTTCCAGCGGACTCATCCGCGTCATCCGAA
TTTGGATTATGCCCTGTATTTGAAAGGGTTGGTATTGTTTAACGAAGACCAGTCTTTTTTGAGCAAACTGGCTTCGCAAG
ACTGGTCGGATCGTGATCCGAAAGCGAACCGTGATGCTTACCATGCATTTGATCAATTGATTAAGCAGTATCCAAACAGC
AAATATGTTCAGGATGCGACCGAGCGTATGGCGAAATTGGTAGATGCTTTGGGCGGAAATGAGATTGCTGTTGCGCGTTA
TTATATGAAGCGCGGGGCATTTCTTGCAGCGGCCAATCGTGCACAAAAAGTGGTGCAGCAATATCAAAATACCCGTTTTG
TCGAAGAGGCATTAGCCATTATGGAGTTGGCTTATATACGTTTGGACAATAAGCAGTTGGCTGAAGATACACACCGTATT
TTGGAGAAAAACTTTCCGAGTAGCCCTTATCTGACCAAACCGTGGCAATTAGATGCCATGCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

75.94

99.625

0.757
  comL Neisseria gonorrhoeae MS11

75.188

99.625

0.749

Multiple sequence alignment