Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   EL309_RS00900 Genome accession   NZ_LR134533
Coordinates   178044..181244 (-) Length   1066 a.a.
NCBI ID   WP_050793677.1    Uniprot ID   A0A3S4Z1G6
Organism   Neisseria weaveri strain NCTC12742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 173044..186244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS00865 (NCTC12742_00161) - 173361..173630 (-) 270 WP_004284064.1 hypothetical protein -
  EL309_RS00870 (NCTC12742_00162) - 173673..173867 (+) 195 WP_036494370.1 hypothetical protein -
  EL309_RS00875 (NCTC12742_00163) - 174189..174668 (-) 480 WP_004284067.1 DUF3465 domain-containing protein -
  EL309_RS00880 (NCTC12742_00164) - 174719..175519 (-) 801 WP_004284068.1 hypothetical protein -
  EL309_RS00885 (NCTC12742_00165) - 175625..175876 (+) 252 WP_004284069.1 NGO1151 family protein -
  EL309_RS00890 (NCTC12742_00166) - 175979..176767 (+) 789 WP_004285521.1 basic amino acid ABC transporter substrate-binding protein -
  EL309_RS00895 (NCTC12742_00167) - 176981..177934 (+) 954 WP_004284072.1 nucleoside hydrolase -
  EL309_RS00900 (NCTC12742_00168) recC 178044..181244 (-) 3201 WP_050793677.1 exodeoxyribonuclease V subunit gamma Machinery gene
  EL309_RS00905 (NCTC12742_00169) rpe 181383..182066 (-) 684 WP_172795931.1 ribulose-phosphate 3-epimerase -
  EL309_RS10755 (NCTC12742_00170) - 182297..182758 (+) 462 WP_232014425.1 Spy/CpxP family protein refolding chaperone -
  EL309_RS00915 (NCTC12742_00171) - 182896..184521 (+) 1626 WP_004284078.1 CTP synthase -
  EL309_RS00920 (NCTC12742_00172) - 184864..185229 (+) 366 WP_004284080.1 YkvA family protein -
  EL309_RS00925 (NCTC12742_00173) - 185369..186229 (+) 861 WP_004284081.1 folate-binding protein YgfZ -

Sequence

Protein


Download         Length: 1066 a.a.        Molecular weight: 121058.14 Da        Isoelectric Point: 4.7607

>NTDB_id=1124104 EL309_RS00900 WP_050793677.1 178044..181244(-) (recC) [Neisseria weaveri strain NCTC12742]
MLYLHQSNRLEVLAGIFAQLQSLLPLDDPFASEEVVVQSQGMRRYLNAYLARRLGVAANLKFSLPAGLAWRLMRDFIPGV
PALSPFSADVVVWRLLDLFGSSRFKDDAQFEPVRAALSEYLGNGDAAAYQLAAQLADVFDQYLVYRPQWIDAWQQGKLVG
LGEDEAWQAALWRFLGDGMQGVPHRVALWQQLLGSLSADKLPERFFVFGVAAMAPMYLQLLQAVAQHCDVHILALNPSSG
YWGDVIDAAQILKNKGDIDLSQSGHPLLASLGKQGRDFFDALSEMPDVEERGYYDDVESGSLLRRLQYQIQTLQMPSENL
TENGLEDGSIQVCSAHSPLRELQVLKTKLLRVLNEHPDWQPHDIAVLMPDIQPYMPYIEVVFGQEQDGAQKLPYSVSDVK
VSRRQPLFYVLEQVFDLLQSRFEADKLLPLLDSHLVLARFNLSREDLPLLMDTVTQLNIHWGVDKAMRGSDALFTWQQGL
DRLILGWMLPENGNGLWQGISAWHGDVNHLAVFEGFAEFIRVLSDTFKEWAQPAEVPVWIERIRKLIQDLTMPDADSQYA
VQQLEQSLARWQEETVLAGFTGILSQETVIRHVEHFLGSESQAGFLRGGITFCSMVPMRNLPFKMICLLGLNDGDFPRNT
KAAAFDLIAKYPQKGDRSRRDDDRYLFLEAIISAREILYLSYLGKNIENNNDKAPSALLAELIDTIAEMTGQEASVLSES
WVENHYLQPFSRNYFSKEADNKATQRSIRQDYAEALNRPSGEIPAFFNPDSFPKPEPIEEQMNITQSEFLSFWRNPVKAW
LRRTLGWSGMYTEQVWEAEEPFKPNCNAKIMARYIDARKNHADFTDVAEKLEAESFFPADKLGGLWQESFRLSALSLDAA
LVGSKKIPARAYRLQIGRFCLEGSLENVYENGQIIYLYQNLNAPQTIELMLEHLIFCAVRPSEIQTYATHIVQADCKVSD
YPEIDKDQAEAILQKWLEYYVWGQARPLPFFAKLSIEAAKTKIKDEKKAREGIVFEYQNGQSGKAPCEYDEVKLVFGRDK
ILPVSTPLFWNMIDDLLVTLVKLIGL

Nucleotide


Download         Length: 3201 bp        

>NTDB_id=1124104 EL309_RS00900 WP_050793677.1 178044..181244(-) (recC) [Neisseria weaveri strain NCTC12742]
ATGCTTTATCTGCACCAATCCAACCGACTCGAAGTATTGGCCGGTATTTTTGCGCAACTGCAGTCGCTGCTTCCTTTAGA
CGATCCTTTTGCTTCGGAGGAGGTGGTTGTTCAGAGTCAGGGAATGCGCCGGTATTTGAATGCGTATTTGGCCCGCCGTT
TGGGGGTGGCGGCGAATTTGAAATTCAGTTTGCCTGCAGGGTTGGCCTGGCGCTTGATGCGTGATTTTATTCCGGGTGTG
CCGGCGTTGAGTCCGTTTTCGGCAGATGTGGTGGTTTGGCGCTTGCTGGATTTATTTGGTAGCAGCAGGTTTAAAGACGA
TGCGCAATTCGAACCGGTTAGGGCGGCGTTGTCGGAGTATCTCGGCAACGGAGATGCCGCGGCCTACCAGCTGGCAGCAC
AGCTGGCGGATGTGTTTGACCAATATTTGGTTTACCGTCCGCAGTGGATTGATGCTTGGCAGCAGGGAAAATTGGTAGGC
TTGGGGGAGGATGAGGCTTGGCAGGCGGCTTTGTGGCGGTTTTTGGGTGACGGTATGCAGGGTGTGCCGCACCGTGTGGC
GTTGTGGCAACAGTTGTTGGGGTCATTGTCTGCCGATAAGTTGCCGGAGCGTTTTTTTGTTTTCGGTGTGGCGGCAATGG
CACCGATGTATCTGCAGTTGTTGCAGGCGGTGGCGCAGCATTGCGATGTGCATATTTTGGCATTGAATCCCAGTAGTGGT
TATTGGGGGGATGTAATTGATGCGGCACAGATTTTAAAAAACAAAGGCGATATAGACTTGAGTCAGAGTGGTCATCCGCT
TTTGGCTTCTTTGGGTAAGCAGGGGCGGGATTTTTTTGATGCGCTGTCCGAGATGCCGGATGTGGAGGAACGCGGATATT
ATGACGATGTAGAGAGCGGGAGTCTGCTTCGCCGCTTACAGTATCAGATTCAAACATTACAGATGCCGTCTGAAAATTTG
ACGGAAAACGGGTTGGAGGACGGCTCGATTCAAGTTTGTTCGGCGCACAGCCCTTTGCGTGAATTGCAGGTTTTGAAAAC
AAAATTATTGAGGGTGTTAAACGAACATCCTGACTGGCAACCGCATGATATCGCCGTTTTGATGCCGGATATCCAGCCCT
ATATGCCTTATATCGAAGTGGTGTTCGGACAGGAGCAGGACGGGGCGCAGAAGCTGCCTTATTCGGTTTCGGATGTTAAA
GTCAGCAGGCGGCAGCCTTTGTTTTATGTGTTGGAGCAGGTATTCGATCTGCTGCAAAGCCGTTTTGAAGCGGATAAGCT
ACTGCCTTTACTGGATAGCCATCTGGTGTTGGCACGTTTTAATCTTTCGCGTGAAGACTTGCCGCTGCTGATGGATACGG
TGACGCAGTTAAATATTCATTGGGGTGTAGATAAAGCCATGCGCGGCAGCGATGCTTTGTTTACCTGGCAGCAGGGTTTG
GATCGGCTGATTCTTGGTTGGATGCTGCCTGAAAACGGAAACGGTTTGTGGCAGGGCATCAGTGCATGGCATGGCGATGT
CAACCATTTGGCTGTGTTTGAAGGCTTTGCAGAGTTTATCCGGGTTTTATCGGATACCTTTAAAGAATGGGCGCAGCCTG
CAGAAGTGCCGGTTTGGATAGAGCGTATACGCAAGCTGATCCAAGATTTAACGATGCCGGATGCGGACAGCCAATATGCC
GTTCAGCAGCTGGAACAGTCTTTGGCGCGCTGGCAGGAAGAAACGGTATTGGCAGGCTTTACCGGCATATTGTCTCAGGA
AACAGTTATCCGTCATGTGGAACATTTTTTAGGTAGCGAGTCTCAAGCCGGTTTTTTGCGTGGTGGCATCACGTTTTGCA
GCATGGTACCGATGCGCAACCTGCCGTTTAAGATGATTTGCCTGTTGGGACTGAATGACGGCGATTTTCCAAGAAACACC
AAGGCCGCGGCTTTTGACCTGATTGCCAAGTATCCGCAAAAAGGCGACCGTTCACGCCGTGATGACGATCGCTATCTGTT
TTTGGAAGCCATTATTAGCGCAAGGGAAATTCTGTATTTGTCTTACTTAGGCAAGAATATTGAAAACAATAATGACAAAG
CCCCTTCTGCTTTATTGGCAGAGTTGATTGATACGATTGCCGAAATGACCGGGCAGGAAGCGTCGGTTTTGTCGGAATCG
TGGGTGGAAAACCATTATTTGCAGCCGTTTTCGAGAAACTATTTTTCAAAAGAAGCCGATAATAAAGCTACCCAAAGAAG
CATACGTCAGGATTATGCCGAAGCTTTGAACCGGCCGTCGGGAGAAATACCGGCTTTCTTCAATCCGGATTCATTTCCAA
AGCCGGAGCCGATTGAAGAGCAAATGAATATTACCCAATCCGAGTTTTTGTCTTTCTGGCGCAACCCGGTAAAAGCCTGG
CTGCGGCGGACGCTCGGTTGGAGCGGAATGTATACCGAGCAGGTATGGGAAGCGGAAGAGCCTTTTAAGCCGAACTGTAA
TGCGAAAATTATGGCCCGTTACATAGATGCTCGAAAAAATCATGCCGATTTTACGGATGTTGCTGAAAAGCTTGAGGCAG
AGAGCTTTTTTCCGGCCGATAAATTGGGCGGATTGTGGCAGGAAAGTTTTCGTCTTTCGGCTTTATCGCTCGATGCCGCA
TTGGTTGGCAGCAAAAAAATTCCGGCACGCGCATACCGTCTGCAAATAGGCCGTTTCTGTTTGGAAGGCAGTTTGGAAAA
TGTATATGAAAACGGCCAAATCATTTATCTGTATCAGAATTTAAATGCACCGCAAACCATAGAGTTGATGTTGGAACACT
TGATTTTCTGCGCCGTCAGGCCGTCTGAAATTCAAACGTATGCAACACATATTGTTCAGGCCGATTGCAAAGTATCGGAT
TATCCGGAAATCGACAAAGACCAGGCTGAGGCAATCCTGCAAAAGTGGCTTGAGTATTATGTTTGGGGGCAAGCGCGTCC
GTTGCCGTTTTTTGCCAAATTGAGTATCGAGGCCGCGAAAACCAAAATCAAAGACGAGAAAAAAGCACGGGAAGGCATAG
TGTTTGAGTATCAAAACGGTCAGAGCGGTAAAGCACCTTGCGAATATGACGAAGTTAAGCTGGTGTTCGGCAGAGACAAA
ATCTTGCCGGTCTCGACGCCGTTATTTTGGAATATGATTGATGACCTGCTGGTTACTCTTGTGAAGCTGATTGGGTTGTA
G

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)

RecC C-terminal domain (RecC_C)

(783-1001)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4Z1G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

56.861

99.812

0.568

Multiple sequence alignment