Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   EL323_RS10235 Genome accession   NZ_LR134526
Coordinates   1747855..1748553 (-) Length   232 a.a.
NCBI ID   WP_002233474.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742855..1753553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS10220 (NCTC10026_01685) - 1743159..1744211 (-) 1053 WP_172595955.1 peptidylprolyl isomerase -
  EL323_RS10225 (NCTC10026_01686) - 1744316..1746724 (-) 2409 WP_172595940.1 LPS-assembly protein LptD -
  EL323_RS10230 (NCTC10026_01687) amgK 1746794..1747798 (+) 1005 WP_002233475.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  EL323_RS10235 (NCTC10026_01688) dsbA1 1747855..1748553 (-) 699 WP_002233474.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL323_RS10240 (NCTC10026_01689) - 1748580..1748771 (+) 192 WP_002233473.1 hypothetical protein -
  EL323_RS10245 (NCTC10026_01690) murJ 1748771..1750309 (+) 1539 WP_105184298.1 murein biosynthesis integral membrane protein MurJ -
  EL323_RS15250 - 1750313..1750444 (+) 132 WP_264209384.1 hypothetical protein -
  EL323_RS10250 (NCTC10026_01691) - 1750441..1751397 (+) 957 WP_080541865.1 YheT family hydrolase -
  EL323_RS10255 (NCTC10026_01692) trpC 1751448..1752230 (+) 783 WP_080541866.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25239.79 Da        Isoelectric Point: 5.6277

>NTDB_id=1123988 EL323_RS10235 WP_002233474.1 1747855..1748553(-) (dsbA1) [Neisseria meningitidis strain NCTC10026]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESSESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1123988 EL323_RS10235 WP_002233474.1 1747855..1748553(-) (dsbA1) [Neisseria meningitidis strain NCTC10026]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTTCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.569

100

0.996
  dsbA2 Neisseria meningitidis MC58

75.661

81.466

0.616

Multiple sequence alignment