Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL323_RS07435 Genome accession   NZ_LR134526
Coordinates   1262541..1263344 (+) Length   267 a.a.
NCBI ID   WP_002217677.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1257541..1268344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS07410 (NCTC10026_01237) lptE 1258449..1258928 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  EL323_RS07415 (NCTC10026_01238) pgeF 1258980..1259759 (-) 780 WP_002233699.1 peptidoglycan editing factor PgeF -
  EL323_RS15480 - 1259926..1260099 (+) 174 Protein_1220 IS5/IS1182 family transposase -
  EL323_RS07425 (NCTC10026_01240) - 1260318..1261265 (+) 948 WP_002229204.1 bile acid:sodium symporter family protein -
  EL323_RS07430 (NCTC10026_01241) rluD 1261418..1262542 (-) 1125 WP_080542307.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL323_RS07435 (NCTC10026_01242) comL 1262541..1263344 (+) 804 WP_002217677.1 outer membrane protein assembly factor BamD Machinery gene
  EL323_RS07440 (NCTC10026_01243) comA 1263402..1265621 (-) 2220 WP_172595951.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL323_RS15485 - 1265703..1265894 (+) 192 Protein_1225 hypothetical protein -
  EL323_RS07445 (NCTC10026_01244) - 1266116..1267168 (+) 1053 WP_080542308.1 IS5 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30790.80 Da        Isoelectric Point: 8.9351

>NTDB_id=1123977 EL323_RS07435 WP_002217677.1 1262541..1263344(+) (comL) [Neisseria meningitidis strain NCTC10026]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEISVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1123977 EL323_RS07435 WP_002217677.1 1262541..1263344(+) (comL) [Neisseria meningitidis strain NCTC10026]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATATCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment