Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   EL267_RS08835 Genome accession   NZ_LR134520
Coordinates   1731676..1732710 (-) Length   344 a.a.
NCBI ID   WP_121205285.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13947     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726676..1737710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL267_RS11395 - 1727255..1727407 (-) 153 Protein_1667 translation initiation factor IF-2 N-terminal domain-containing protein -
  EL267_RS08800 (NCTC13947_01751) - 1727427..1727729 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  EL267_RS08805 (NCTC13947_01752) rnpM 1727722..1728018 (-) 297 WP_001140526.1 RNase P modulator RnpM -
  EL267_RS08810 (NCTC13947_01753) nusA 1728040..1729191 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  EL267_RS08815 (NCTC13947_01754) rimP 1729227..1729703 (-) 477 WP_041971671.1 ribosome maturation factor RimP -
  EL267_RS08825 (NCTC13947_01756) trmB 1730193..1730828 (-) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL267_RS08830 (NCTC13947_01757) ccrZ 1730818..1731618 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  EL267_RS08835 (NCTC13947_01758) pptB 1731676..1732710 (-) 1035 WP_121205285.1 ABC transporter permease Regulator
  EL267_RS08840 (NCTC13947_01759) pptA 1732712..1733437 (-) 726 WP_000912310.1 ABC transporter ATP-binding protein Regulator
  EL267_RS08845 - 1733509..1733695 (+) 187 Protein_1676 hypothetical protein -
  EL267_RS08850 (NCTC13947_01760) - 1733747..1734250 (-) 504 WP_000773453.1 hypothetical protein -
  EL267_RS08855 (NCTC13947_01761) - 1734586..1735005 (+) 420 WP_000368097.1 HIT family protein -
  EL267_RS08860 (NCTC13947_01762) - 1735002..1735298 (+) 297 WP_000690175.1 hypothetical protein -
  EL267_RS08865 (NCTC13947_01763) brpA 1735362..1736669 (-) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  EL267_RS08870 (NCTC13947_01764) - 1736678..1737199 (-) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  EL267_RS08875 (NCTC13947_01765) tsaE 1737192..1737635 (-) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40279.59 Da        Isoelectric Point: 10.4988

>NTDB_id=1123825 EL267_RS08835 WP_121205285.1 1731676..1732710(-) (pptB) [Streptococcus agalactiae strain NCTC13947]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFWLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1123825 EL267_RS08835 WP_121205285.1 1731676..1732710(-) (pptB) [Streptococcus agalactiae strain NCTC13947]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTGGTTATATCAGTATAGCCAATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACCATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483

Multiple sequence alignment