Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | EL256_RS05815 | Genome accession | NZ_LR134517 |
| Coordinates | 1209465..1209869 (-) | Length | 134 a.a. |
| NCBI ID | WP_001967448.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC13345 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1204465..1214869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL256_RS05790 (NCTC13345_01139) | recJ | 1204980..1206530 (+) | 1551 | WP_126443217.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| EL256_RS05795 (NCTC13345_01140) | - | 1206530..1207411 (+) | 882 | WP_126443219.1 | RluA family pseudouridine synthase | - |
| EL256_RS05800 (NCTC13345_01141) | - | 1207511..1208071 (-) | 561 | WP_126443221.1 | hypothetical protein | - |
| EL256_RS05805 (NCTC13345_01142) | - | 1208055..1208393 (-) | 339 | WP_000699881.1 | hypothetical protein | - |
| EL256_RS05810 (NCTC13345_01143) | - | 1208508..1209179 (-) | 672 | WP_126443223.1 | tetratricopeptide repeat protein | - |
| EL256_RS05815 (NCTC13345_01144) | dprB | 1209465..1209869 (-) | 405 | WP_001967448.1 | Holliday junction resolvase RuvX | Machinery gene |
| EL256_RS05820 (NCTC13345_01145) | dprA | 1209866..1210666 (-) | 801 | WP_126443225.1 | DNA-processing protein DprA | Machinery gene |
| EL256_RS05825 (NCTC13345_01146) | minE | 1210673..1210906 (-) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| EL256_RS05830 (NCTC13345_01147) | minD | 1210903..1211709 (-) | 807 | WP_064437350.1 | septum site-determining protein MinD | - |
| EL256_RS05835 (NCTC13345_01148) | ilvC | 1211728..1212720 (-) | 993 | WP_126443227.1 | ketol-acid reductoisomerase | - |
| EL256_RS05845 (NCTC13345_01150) | - | 1212969..1213751 (+) | 783 | WP_126443229.1 | NAD+ synthase | - |
| EL256_RS05850 (NCTC13345_01151) | - | 1213748..1214686 (+) | 939 | WP_126443231.1 | tetraacyldisaccharide 4'-kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15273.74 Da Isoelectric Point: 8.2895
>NTDB_id=1123758 EL256_RS05815 WP_001967448.1 1209465..1209869(-) (dprB) [Helicobacter pylori strain NCTC13345]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=1123758 EL256_RS05815 WP_001967448.1 1209465..1209869(-) (dprB) [Helicobacter pylori strain NCTC13345]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGTCAACAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGTCAACAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
96.269 |
100 |
0.963 |