Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EL256_RS00865 Genome accession   NZ_LR134517
Coordinates   179527..179790 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174527..184790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS00835 (NCTC13345_00169) groES 174809..175165 (-) 357 WP_126442365.1 co-chaperone GroES -
  EL256_RS00845 (NCTC13345_00170) dnaG 175452..177131 (+) 1680 WP_126442366.1 DNA primase -
  EL256_RS00850 (NCTC13345_00171) - 177128..178180 (+) 1053 WP_126442367.1 MnmA/TRMU family protein -
  EL256_RS00855 (NCTC13345_00172) - 178273..179100 (+) 828 WP_126442368.1 DUF5718 family protein -
  EL256_RS00860 (NCTC13345_00173) comB2 179246..179527 (+) 282 WP_101000542.1 TrbC/VirB2 family protein Machinery gene
  EL256_RS00865 (NCTC13345_00174) comB3 179527..179790 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  EL256_RS00870 (NCTC13345_00175) comB4 179792..182155 (+) 2364 WP_126442369.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EL256_RS00880 (NCTC13345_00177) - 182460..183800 (+) 1341 WP_164758890.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=1123747 EL256_RS00865 WP_000584956.1 179527..179790(+) (comB3) [Helicobacter pylori strain NCTC13345]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=1123747 EL256_RS00865 WP_000584956.1 179527..179790(+) (comB3) [Helicobacter pylori strain NCTC13345]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment