Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EL256_RS00860 Genome accession   NZ_LR134517
Coordinates   179246..179527 (+) Length   93 a.a.
NCBI ID   WP_101000542.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174246..184527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS00835 (NCTC13345_00169) groES 174809..175165 (-) 357 WP_126442365.1 co-chaperone GroES -
  EL256_RS00845 (NCTC13345_00170) dnaG 175452..177131 (+) 1680 WP_126442366.1 DNA primase -
  EL256_RS00850 (NCTC13345_00171) - 177128..178180 (+) 1053 WP_126442367.1 MnmA/TRMU family protein -
  EL256_RS00855 (NCTC13345_00172) - 178273..179100 (+) 828 WP_126442368.1 DUF5718 family protein -
  EL256_RS00860 (NCTC13345_00173) comB2 179246..179527 (+) 282 WP_101000542.1 TrbC/VirB2 family protein Machinery gene
  EL256_RS00865 (NCTC13345_00174) comB3 179527..179790 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  EL256_RS00870 (NCTC13345_00175) comB4 179792..182155 (+) 2364 WP_126442369.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EL256_RS00880 (NCTC13345_00177) - 182460..183800 (+) 1341 WP_164758890.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10479.71 Da        Isoelectric Point: 9.1450

>NTDB_id=1123746 EL256_RS00860 WP_101000542.1 179246..179527(+) (comB2) [Helicobacter pylori strain NCTC13345]
MSAHFLKIIFLVGMCVSSLSAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1123746 EL256_RS00860 WP_101000542.1 179246..179527(+) (comB2) [Helicobacter pylori strain NCTC13345]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTCCGCTGAAGGTTTAGAGGGTTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment