Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EL256_RS00300 | Genome accession | NZ_LR134517 |
| Coordinates | 66370..66945 (+) | Length | 191 a.a. |
| NCBI ID | WP_126442292.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC13345 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 61370..71945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL256_RS00275 (NCTC13345_00055) | uvrD | 62052..64106 (+) | 2055 | WP_197721163.1 | DNA helicase UvrD | - |
| EL256_RS00280 (NCTC13345_00056) | flgA | 64103..64759 (+) | 657 | WP_126442290.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EL256_RS00285 (NCTC13345_00057) | - | 64769..65332 (+) | 564 | WP_000780097.1 | UbiX family flavin prenyltransferase | - |
| EL256_RS00290 (NCTC13345_00058) | coaD | 65332..65805 (+) | 474 | WP_001169246.1 | pantetheine-phosphate adenylyltransferase | - |
| EL256_RS00295 (NCTC13345_00059) | tmk | 65807..66382 (+) | 576 | WP_126442291.1 | dTMP kinase | - |
| EL256_RS00300 (NCTC13345_00060) | comFC | 66370..66945 (+) | 576 | WP_126442292.1 | ComF family protein | Machinery gene |
| EL256_RS00305 (NCTC13345_00061) | - | 66977..69013 (+) | 2037 | WP_126442293.1 | N-6 DNA methylase | - |
| EL256_RS08210 | - | 69010..70270 (+) | 1261 | Protein_60 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21405.95 Da Isoelectric Point: 8.6742
>NTDB_id=1123745 EL256_RS00300 WP_126442292.1 66370..66945(+) (comFC) [Helicobacter pylori strain NCTC13345]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRTNHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRTNHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=1123745 EL256_RS00300 WP_126442292.1 66370..66945(+) (comFC) [Helicobacter pylori strain NCTC13345]
ATGCGTTGTCTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACCACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGACGAATGA
ATGCGTTGTCTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACCACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |